Experiment: Rifampicin 0.0024 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AO356_28530 and AO356_28535 are separated by 13 nucleotides AO356_28535 and AO356_28540 are separated by 17 nucleotides
AO356_28530: AO356_28530 - mannonate dehydratase, at 6,630,676 to 6,631,851
_28530
AO356_28535: AO356_28535 - mannitol dehydrogenase, at 6,631,865 to 6,633,322
_28535
AO356_28540: AO356_28540 - D-mannose transporter (from data) , at 6,633,340 to 6,634,632
_28540
Position (kb)
6631
6632
6633
6634 Strain fitness (log2 ratio)
-2
-1
0
1 at 6631.028 kb on + strand, within AO356_28530 at 6631.029 kb on - strand, within AO356_28530 at 6631.029 kb on - strand, within AO356_28530 at 6631.548 kb on - strand, within AO356_28530 at 6631.610 kb on + strand, within AO356_28530 at 6631.726 kb on + strand, within AO356_28530 at 6631.726 kb on + strand, within AO356_28530 at 6631.736 kb on - strand at 6631.955 kb on + strand at 6632.146 kb on + strand, within AO356_28535 at 6632.353 kb on - strand, within AO356_28535 at 6632.430 kb on + strand, within AO356_28535 at 6633.039 kb on + strand, within AO356_28535 at 6633.039 kb on + strand, within AO356_28535 at 6633.039 kb on + strand, within AO356_28535 at 6633.039 kb on + strand, within AO356_28535 at 6633.040 kb on - strand, within AO356_28535 at 6633.040 kb on - strand, within AO356_28535 at 6633.222 kb on + strand at 6633.422 kb on + strand at 6633.423 kb on - strand at 6633.620 kb on + strand, within AO356_28540 at 6633.621 kb on - strand, within AO356_28540 at 6633.638 kb on + strand, within AO356_28540 at 6633.687 kb on + strand, within AO356_28540 at 6633.687 kb on + strand, within AO356_28540 at 6633.688 kb on - strand, within AO356_28540 at 6633.688 kb on - strand, within AO356_28540 at 6633.899 kb on + strand, within AO356_28540 at 6633.935 kb on + strand, within AO356_28540 at 6633.935 kb on + strand, within AO356_28540 at 6633.936 kb on - strand, within AO356_28540 at 6633.936 kb on - strand, within AO356_28540 at 6633.936 kb on - strand, within AO356_28540 at 6633.936 kb on - strand, within AO356_28540 at 6633.939 kb on + strand, within AO356_28540 at 6633.940 kb on - strand, within AO356_28540 at 6633.941 kb on + strand, within AO356_28540 at 6634.134 kb on + strand, within AO356_28540 at 6634.134 kb on + strand, within AO356_28540 at 6634.157 kb on + strand, within AO356_28540 at 6634.157 kb on + strand, within AO356_28540 at 6634.260 kb on - strand, within AO356_28540
Per-strain Table
Position Strand Gene LocusTag Fraction Rifampicin 0.0024 mg/ml remove 6,631,028 + AO356_28530 0.30 +0.6 6,631,029 - AO356_28530 0.30 +0.0 6,631,029 - AO356_28530 0.30 +0.0 6,631,548 - AO356_28530 0.74 +0.9 6,631,610 + AO356_28530 0.79 +0.4 6,631,726 + AO356_28530 0.89 -0.0 6,631,726 + AO356_28530 0.89 -0.2 6,631,736 - +1.0 6,631,955 + -0.1 6,632,146 + AO356_28535 0.19 -1.0 6,632,353 - AO356_28535 0.33 -0.2 6,632,430 + AO356_28535 0.39 -0.5 6,633,039 + AO356_28535 0.81 -0.8 6,633,039 + AO356_28535 0.81 -0.5 6,633,039 + AO356_28535 0.81 +0.1 6,633,039 + AO356_28535 0.81 -0.5 6,633,040 - AO356_28535 0.81 +1.3 6,633,040 - AO356_28535 0.81 -0.8 6,633,222 + +0.4 6,633,422 + -0.6 6,633,423 - +0.1 6,633,620 + AO356_28540 0.22 +1.2 6,633,621 - AO356_28540 0.22 +0.1 6,633,638 + AO356_28540 0.23 -0.2 6,633,687 + AO356_28540 0.27 -1.3 6,633,687 + AO356_28540 0.27 -1.1 6,633,688 - AO356_28540 0.27 -0.3 6,633,688 - AO356_28540 0.27 +0.8 6,633,899 + AO356_28540 0.43 -0.9 6,633,935 + AO356_28540 0.46 +0.2 6,633,935 + AO356_28540 0.46 -0.1 6,633,936 - AO356_28540 0.46 -0.1 6,633,936 - AO356_28540 0.46 -1.1 6,633,936 - AO356_28540 0.46 -0.6 6,633,936 - AO356_28540 0.46 +1.3 6,633,939 + AO356_28540 0.46 +0.0 6,633,940 - AO356_28540 0.46 +1.2 6,633,941 + AO356_28540 0.46 -0.4 6,634,134 + AO356_28540 0.61 -1.6 6,634,134 + AO356_28540 0.61 +0.5 6,634,157 + AO356_28540 0.63 -1.8 6,634,157 + AO356_28540 0.63 +0.0 6,634,260 - AO356_28540 0.71 +0.6
Or see this region's nucleotide sequence