Experiment: Rifampicin 0.0024 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AO356_28080 and AO356_28085 are separated by 27 nucleotides AO356_28085 and AO356_28090 overlap by 4 nucleotides AO356_28090 and AO356_28095 overlap by 4 nucleotides
AO356_28080: AO356_28080 - branched-chain amino acid ABC transporter substrate-binding protein, at 6,411,441 to 6,412,607
_28080
AO356_28085: AO356_28085 - hypothetical protein, at 6,412,635 to 6,413,624
_28085
AO356_28090: AO356_28090 - ABC transporter ATP-binding protein, at 6,413,621 to 6,414,352
_28090
AO356_28095: AO356_28095 - multidrug ABC transporter permease, at 6,414,349 to 6,415,140
_28095
Position (kb)
6412
6413
6414 Strain fitness (log2 ratio)
-1
0
1 at 6411.988 kb on - strand, within AO356_28080 at 6412.120 kb on - strand, within AO356_28080 at 6412.165 kb on - strand, within AO356_28080 at 6412.251 kb on + strand, within AO356_28080 at 6412.452 kb on + strand, within AO356_28080 at 6412.474 kb on + strand, within AO356_28080 at 6412.474 kb on + strand, within AO356_28080 at 6412.573 kb on - strand at 6412.801 kb on + strand, within AO356_28085 at 6412.857 kb on + strand, within AO356_28085 at 6412.857 kb on + strand, within AO356_28085 at 6412.857 kb on + strand, within AO356_28085 at 6412.858 kb on - strand, within AO356_28085 at 6412.858 kb on - strand, within AO356_28085 at 6412.858 kb on - strand, within AO356_28085 at 6412.858 kb on - strand, within AO356_28085 at 6412.928 kb on - strand, within AO356_28085 at 6412.983 kb on + strand, within AO356_28085 at 6412.983 kb on + strand, within AO356_28085 at 6412.983 kb on + strand, within AO356_28085 at 6412.983 kb on + strand, within AO356_28085 at 6412.984 kb on - strand, within AO356_28085 at 6412.984 kb on - strand, within AO356_28085 at 6413.777 kb on + strand, within AO356_28090 at 6414.514 kb on + strand, within AO356_28095 at 6414.523 kb on + strand, within AO356_28095 at 6414.523 kb on + strand, within AO356_28095 at 6414.523 kb on + strand, within AO356_28095 at 6414.523 kb on + strand, within AO356_28095 at 6414.523 kb on + strand, within AO356_28095 at 6414.524 kb on - strand, within AO356_28095 at 6414.524 kb on - strand, within AO356_28095 at 6414.524 kb on - strand, within AO356_28095 at 6414.524 kb on - strand, within AO356_28095 at 6414.524 kb on - strand, within AO356_28095 at 6414.524 kb on - strand, within AO356_28095 at 6414.524 kb on - strand, within AO356_28095 at 6414.541 kb on + strand, within AO356_28095 at 6414.541 kb on + strand, within AO356_28095 at 6414.541 kb on + strand, within AO356_28095 at 6414.541 kb on + strand, within AO356_28095 at 6414.542 kb on - strand, within AO356_28095 at 6414.542 kb on - strand, within AO356_28095 at 6414.542 kb on - strand, within AO356_28095
Per-strain Table
Position Strand Gene LocusTag Fraction Rifampicin 0.0024 mg/ml remove 6,411,988 - AO356_28080 0.47 -0.1 6,412,120 - AO356_28080 0.58 +1.0 6,412,165 - AO356_28080 0.62 +0.2 6,412,251 + AO356_28080 0.69 -1.7 6,412,452 + AO356_28080 0.87 -0.1 6,412,474 + AO356_28080 0.89 -1.0 6,412,474 + AO356_28080 0.89 +0.9 6,412,573 - +0.5 6,412,801 + AO356_28085 0.17 -1.5 6,412,857 + AO356_28085 0.22 -0.7 6,412,857 + AO356_28085 0.22 -0.6 6,412,857 + AO356_28085 0.22 -0.3 6,412,858 - AO356_28085 0.23 -0.9 6,412,858 - AO356_28085 0.23 -0.2 6,412,858 - AO356_28085 0.23 +0.2 6,412,858 - AO356_28085 0.23 +0.1 6,412,928 - AO356_28085 0.30 +0.2 6,412,983 + AO356_28085 0.35 -0.3 6,412,983 + AO356_28085 0.35 -0.2 6,412,983 + AO356_28085 0.35 -0.1 6,412,983 + AO356_28085 0.35 -0.2 6,412,984 - AO356_28085 0.35 -0.3 6,412,984 - AO356_28085 0.35 +0.4 6,413,777 + AO356_28090 0.21 +1.3 6,414,514 + AO356_28095 0.21 -0.2 6,414,523 + AO356_28095 0.22 +0.5 6,414,523 + AO356_28095 0.22 +0.2 6,414,523 + AO356_28095 0.22 +0.2 6,414,523 + AO356_28095 0.22 -0.9 6,414,523 + AO356_28095 0.22 +1.6 6,414,524 - AO356_28095 0.22 -0.2 6,414,524 - AO356_28095 0.22 +0.3 6,414,524 - AO356_28095 0.22 -0.5 6,414,524 - AO356_28095 0.22 -0.1 6,414,524 - AO356_28095 0.22 +0.6 6,414,524 - AO356_28095 0.22 +0.6 6,414,524 - AO356_28095 0.22 -1.3 6,414,541 + AO356_28095 0.24 +0.5 6,414,541 + AO356_28095 0.24 +0.3 6,414,541 + AO356_28095 0.24 -0.0 6,414,541 + AO356_28095 0.24 +1.6 6,414,542 - AO356_28095 0.24 -0.1 6,414,542 - AO356_28095 0.24 +0.6 6,414,542 - AO356_28095 0.24 -0.2
Or see this region's nucleotide sequence