Experiment: Rifampicin 0.0024 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AO356_28070 and AO356_28075 are separated by 2 nucleotides AO356_28075 and AO356_28080 are separated by 156 nucleotides AO356_28080 and AO356_28085 are separated by 27 nucleotides
AO356_28070: AO356_28070 - histidine kinase, at 6,409,810 to 6,411,063
_28070
AO356_28075: AO356_28075 - hypothetical protein, at 6,411,066 to 6,411,284
_28075
AO356_28080: AO356_28080 - branched-chain amino acid ABC transporter substrate-binding protein, at 6,411,441 to 6,412,607
_28080
AO356_28085: AO356_28085 - hypothetical protein, at 6,412,635 to 6,413,624
_28085
Position (kb)
6411
6412
6413 Strain fitness (log2 ratio)
-2
-1
0
1 at 6410.658 kb on - strand, within AO356_28070 at 6410.658 kb on - strand, within AO356_28070 at 6410.777 kb on - strand, within AO356_28070 at 6410.924 kb on + strand, within AO356_28070 at 6410.924 kb on + strand, within AO356_28070 at 6411.324 kb on + strand at 6411.324 kb on + strand at 6411.325 kb on - strand at 6411.325 kb on - strand at 6411.325 kb on - strand at 6411.350 kb on - strand at 6411.353 kb on - strand at 6411.385 kb on + strand at 6411.385 kb on + strand at 6411.386 kb on - strand at 6411.410 kb on + strand at 6411.410 kb on + strand at 6411.459 kb on + strand at 6411.460 kb on - strand at 6411.460 kb on - strand at 6411.988 kb on - strand, within AO356_28080 at 6412.120 kb on - strand, within AO356_28080 at 6412.165 kb on - strand, within AO356_28080 at 6412.251 kb on + strand, within AO356_28080 at 6412.452 kb on + strand, within AO356_28080 at 6412.474 kb on + strand, within AO356_28080 at 6412.474 kb on + strand, within AO356_28080 at 6412.573 kb on - strand at 6412.801 kb on + strand, within AO356_28085 at 6412.857 kb on + strand, within AO356_28085 at 6412.857 kb on + strand, within AO356_28085 at 6412.857 kb on + strand, within AO356_28085 at 6412.858 kb on - strand, within AO356_28085 at 6412.858 kb on - strand, within AO356_28085 at 6412.858 kb on - strand, within AO356_28085 at 6412.858 kb on - strand, within AO356_28085 at 6412.928 kb on - strand, within AO356_28085 at 6412.983 kb on + strand, within AO356_28085 at 6412.983 kb on + strand, within AO356_28085 at 6412.983 kb on + strand, within AO356_28085 at 6412.983 kb on + strand, within AO356_28085 at 6412.984 kb on - strand, within AO356_28085 at 6412.984 kb on - strand, within AO356_28085
Per-strain Table
Position Strand Gene LocusTag Fraction Rifampicin 0.0024 mg/ml remove 6,410,658 - AO356_28070 0.68 +0.4 6,410,658 - AO356_28070 0.68 +1.2 6,410,777 - AO356_28070 0.77 +1.4 6,410,924 + AO356_28070 0.89 -1.4 6,410,924 + AO356_28070 0.89 -0.0 6,411,324 + +0.9 6,411,324 + -1.8 6,411,325 - -1.5 6,411,325 - -0.1 6,411,325 - -0.8 6,411,350 - +0.6 6,411,353 - -1.2 6,411,385 + +1.7 6,411,385 + +1.3 6,411,386 - +1.0 6,411,410 + +0.5 6,411,410 + +0.5 6,411,459 + +0.4 6,411,460 - -0.6 6,411,460 - +0.3 6,411,988 - AO356_28080 0.47 -0.1 6,412,120 - AO356_28080 0.58 +1.0 6,412,165 - AO356_28080 0.62 +0.2 6,412,251 + AO356_28080 0.69 -1.7 6,412,452 + AO356_28080 0.87 -0.1 6,412,474 + AO356_28080 0.89 -1.0 6,412,474 + AO356_28080 0.89 +0.9 6,412,573 - +0.5 6,412,801 + AO356_28085 0.17 -1.5 6,412,857 + AO356_28085 0.22 -0.7 6,412,857 + AO356_28085 0.22 -0.6 6,412,857 + AO356_28085 0.22 -0.3 6,412,858 - AO356_28085 0.23 -0.9 6,412,858 - AO356_28085 0.23 -0.2 6,412,858 - AO356_28085 0.23 +0.2 6,412,858 - AO356_28085 0.23 +0.1 6,412,928 - AO356_28085 0.30 +0.2 6,412,983 + AO356_28085 0.35 -0.3 6,412,983 + AO356_28085 0.35 -0.2 6,412,983 + AO356_28085 0.35 -0.1 6,412,983 + AO356_28085 0.35 -0.2 6,412,984 - AO356_28085 0.35 -0.3 6,412,984 - AO356_28085 0.35 +0.4
Or see this region's nucleotide sequence