Experiment: Rifampicin 0.0024 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AO356_25240 and AO356_25245 overlap by 4 nucleotides AO356_25245 and AO356_25250 are separated by 136 nucleotides AO356_25250 and AO356_25255 overlap by 13 nucleotides AO356_25255 and AO356_25260 are separated by 22 nucleotides
AO356_25240: AO356_25240 - oxidoreductase, at 5,715,111 to 5,715,272
_25240
AO356_25245: AO356_25245 - anaerobic ribonucleoside-triphosphate reductase activating protein, at 5,715,269 to 5,715,964
_25245
AO356_25250: AO356_25250 - hypothetical protein, at 5,716,101 to 5,717,468
_25250
AO356_25255: AO356_25255 - FTR1 family iron permease, at 5,717,456 to 5,718,310
_25255
AO356_25260: AO356_25260 - iron transporter, at 5,718,333 to 5,718,677
_25260
Position (kb) 5716
5717
5718 Strain fitness (log2 ratio) -2
-1
0
1 at 5715.740 kb on + strand, within AO356_25245 at 5715.741 kb on - strand, within AO356_25245 at 5715.958 kb on + strand at 5715.958 kb on + strand at 5715.959 kb on - strand at 5715.959 kb on - strand at 5715.959 kb on - strand at 5716.094 kb on + strand at 5716.095 kb on - strand at 5716.095 kb on - strand at 5716.102 kb on + strand at 5716.303 kb on + strand, within AO356_25250 at 5716.304 kb on - strand, within AO356_25250 at 5716.390 kb on + strand, within AO356_25250 at 5716.391 kb on - strand, within AO356_25250 at 5716.391 kb on - strand, within AO356_25250 at 5716.905 kb on + strand, within AO356_25250 at 5717.071 kb on + strand, within AO356_25250 at 5717.254 kb on - strand, within AO356_25250 at 5717.371 kb on + strand at 5717.531 kb on + strand at 5717.623 kb on + strand, within AO356_25255 at 5717.623 kb on + strand, within AO356_25255 at 5717.656 kb on - strand, within AO356_25255 at 5717.656 kb on - strand, within AO356_25255 at 5718.155 kb on + strand, within AO356_25255 at 5718.195 kb on - strand, within AO356_25255 at 5718.195 kb on - strand, within AO356_25255 at 5718.195 kb on - strand, within AO356_25255 at 5718.292 kb on + strand at 5718.292 kb on + strand at 5718.293 kb on - strand at 5718.293 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Rifampicin 0.0024 mg/ml remove 5,715,740 + AO356_25245 0.68 +0.6 5,715,741 - AO356_25245 0.68 +0.8 5,715,958 + -1.0 5,715,958 + +0.2 5,715,959 - -0.9 5,715,959 - +0.6 5,715,959 - -0.6 5,716,094 + +0.3 5,716,095 - -1.5 5,716,095 - +0.4 5,716,102 + +0.1 5,716,303 + AO356_25250 0.15 -1.1 5,716,304 - AO356_25250 0.15 -0.5 5,716,390 + AO356_25250 0.21 -1.3 5,716,391 - AO356_25250 0.21 -1.6 5,716,391 - AO356_25250 0.21 -0.5 5,716,905 + AO356_25250 0.59 -0.2 5,717,071 + AO356_25250 0.71 +0.4 5,717,254 - AO356_25250 0.84 -1.1 5,717,371 + +0.1 5,717,531 + -0.5 5,717,623 + AO356_25255 0.20 -0.1 5,717,623 + AO356_25255 0.20 -0.2 5,717,656 - AO356_25255 0.23 +0.6 5,717,656 - AO356_25255 0.23 -0.9 5,718,155 + AO356_25255 0.82 -1.9 5,718,195 - AO356_25255 0.86 -0.4 5,718,195 - AO356_25255 0.86 -0.7 5,718,195 - AO356_25255 0.86 -0.7 5,718,292 + +0.3 5,718,292 + -0.7 5,718,293 - +0.0 5,718,293 - -0.4
Or see this region's nucleotide sequence