Experiment: Rifampicin 0.0024 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AO356_25160 and AO356_25165 are separated by 10 nucleotides AO356_25165 and AO356_25170 overlap by 7 nucleotides AO356_25170 and AO356_25175 overlap by 1 nucleotides AO356_25175 and AO356_25180 are separated by 165 nucleotides
AO356_25160: AO356_25160 - protease, at 5,693,893 to 5,694,888
_25160
AO356_25165: AO356_25165 - protease, at 5,694,899 to 5,695,789
_25165
AO356_25170: AO356_25170 - lipid carrier protein, at 5,695,783 to 5,696,253
_25170
AO356_25175: AO356_25175 - zinc-binding protein, at 5,696,253 to 5,696,627
_25175
AO356_25180: AO356_25180 - DnrE protein, at 5,696,793 to 5,697,470
_25180
Position (kb) 5695
5696
5697 Strain fitness (log2 ratio) -1
0
1 at 5694.929 kb on + strand at 5694.960 kb on - strand at 5694.995 kb on + strand, within AO356_25165 at 5695.078 kb on + strand, within AO356_25165 at 5695.403 kb on + strand, within AO356_25165 at 5695.403 kb on + strand, within AO356_25165 at 5695.599 kb on - strand, within AO356_25165 at 5695.768 kb on - strand at 5695.768 kb on - strand at 5695.985 kb on - strand, within AO356_25170 at 5695.985 kb on - strand, within AO356_25170 at 5696.101 kb on - strand, within AO356_25170 at 5696.193 kb on - strand, within AO356_25170 at 5696.283 kb on + strand at 5696.283 kb on + strand at 5696.283 kb on + strand at 5696.794 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Rifampicin 0.0024 mg/ml remove 5,694,929 + -0.5 5,694,960 - +0.4 5,694,995 + AO356_25165 0.11 +0.0 5,695,078 + AO356_25165 0.20 +0.4 5,695,403 + AO356_25165 0.57 -0.9 5,695,403 + AO356_25165 0.57 -0.6 5,695,599 - AO356_25165 0.79 -0.9 5,695,768 - +0.3 5,695,768 - +1.0 5,695,985 - AO356_25170 0.43 +0.9 5,695,985 - AO356_25170 0.43 +1.6 5,696,101 - AO356_25170 0.68 +1.2 5,696,193 - AO356_25170 0.87 -0.5 5,696,283 + +1.3 5,696,283 + +0.7 5,696,283 + +1.0 5,696,794 + +0.3
Or see this region's nucleotide sequence