Strain Fitness in Pseudomonas fluorescens FW300-N2C3 around AO356_24630

Experiment: Rifampicin 0.0024 mg/ml

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntAO356_24625 and AO356_24630 overlap by 4 nucleotidesAO356_24630 and AO356_24635 are separated by 191 nucleotidesAO356_24635 and AO356_24640 overlap by 44 nucleotides AO356_24625: AO356_24625 - chromosome segregation protein SMC, at 5,567,093 to 5,570,734 _24625 AO356_24630: AO356_24630 - exonuclease SbcD, at 5,570,731 to 5,571,975 _24630 AO356_24635: AO356_24635 - hypothetical protein, at 5,572,167 to 5,572,364 _24635 AO356_24640: AO356_24640 - protein BatD, at 5,572,321 to 5,573,958 _24640 Position (kb) 5570 5571 5572Strain fitness (log2 ratio) -5 -4 -3 -2 -1 0 1 2at 5570.144 kb on - strand, within AO356_24625at 5570.144 kb on - strand, within AO356_24625at 5570.145 kb on + strand, within AO356_24625at 5570.145 kb on + strand, within AO356_24625at 5570.145 kb on + strand, within AO356_24625at 5570.145 kb on + strand, within AO356_24625at 5570.295 kb on + strand, within AO356_24625at 5570.364 kb on - strand, within AO356_24625at 5570.603 kb on - strandat 5570.813 kb on + strandat 5570.813 kb on + strandat 5570.814 kb on - strandat 5570.814 kb on - strandat 5570.918 kb on + strand, within AO356_24630at 5571.308 kb on + strand, within AO356_24630at 5571.308 kb on + strand, within AO356_24630at 5571.308 kb on + strand, within AO356_24630at 5571.309 kb on - strand, within AO356_24630at 5571.309 kb on - strand, within AO356_24630at 5571.309 kb on - strand, within AO356_24630at 5571.309 kb on - strand, within AO356_24630at 5571.309 kb on - strand, within AO356_24630at 5571.504 kb on - strand, within AO356_24630at 5571.785 kb on + strand, within AO356_24630at 5571.851 kb on - strandat 5571.851 kb on - strandat 5572.083 kb on + strandat 5572.322 kb on + strandat 5572.322 kb on + strandat 5572.323 kb on - strandat 5572.323 kb on - strandat 5572.331 kb on + strandat 5572.728 kb on - strand, within AO356_24640

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Rifampicin 0.0024 mg/ml
remove
5,570,144 - AO356_24625 0.84 +0.3
5,570,144 - AO356_24625 0.84 +0.0
5,570,145 + AO356_24625 0.84 -0.6
5,570,145 + AO356_24625 0.84 +1.0
5,570,145 + AO356_24625 0.84 +0.8
5,570,145 + AO356_24625 0.84 +1.8
5,570,295 + AO356_24625 0.88 -0.1
5,570,364 - AO356_24625 0.90 +0.4
5,570,603 - -0.7
5,570,813 + -0.1
5,570,813 + -1.1
5,570,814 - -0.2
5,570,814 - +0.9
5,570,918 + AO356_24630 0.15 +1.9
5,571,308 + AO356_24630 0.46 +0.9
5,571,308 + AO356_24630 0.46 +0.2
5,571,308 + AO356_24630 0.46 +0.0
5,571,309 - AO356_24630 0.46 -1.6
5,571,309 - AO356_24630 0.46 +0.4
5,571,309 - AO356_24630 0.46 -1.2
5,571,309 - AO356_24630 0.46 +0.8
5,571,309 - AO356_24630 0.46 -0.3
5,571,504 - AO356_24630 0.62 -0.6
5,571,785 + AO356_24630 0.85 +1.1
5,571,851 - +1.6
5,571,851 - +0.2
5,572,083 + +0.9
5,572,322 + -0.5
5,572,322 + -0.0
5,572,323 - -0.0
5,572,323 - +0.6
5,572,331 + -4.8
5,572,728 - AO356_24640 0.25 -3.0

Or see this region's nucleotide sequence