Experiment: Rifampicin 0.0024 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AO356_15355 and AO356_15360 are separated by 72 nucleotides AO356_15360 and AO356_15365 are separated by 227 nucleotides AO356_15365 and AO356_15370 are separated by 39 nucleotides AO356_15370 and AO356_15375 are separated by 90 nucleotides
AO356_15355: AO356_15355 - murein transglycosylase, at 3,477,427 to 3,478,749
_15355
AO356_15360: AO356_15360 - lipoyl synthase, at 3,478,822 to 3,478,986
_15360
AO356_15365: AO356_15365 - DNA polymerase III subunit delta, at 3,479,214 to 3,480,251
_15365
AO356_15370: AO356_15370 - hypothetical protein, at 3,480,291 to 3,480,896
_15370
AO356_15375: AO356_15375 - leucine--tRNA ligase, at 3,480,987 to 3,483,593
_15375
Position (kb)
3479
3480
3481 Strain fitness (log2 ratio)
-1
0
1
2 at 3478.301 kb on + strand, within AO356_15355 at 3478.394 kb on + strand, within AO356_15355 at 3478.394 kb on + strand, within AO356_15355 at 3478.394 kb on + strand, within AO356_15355 at 3478.395 kb on - strand, within AO356_15355 at 3478.660 kb on - strand at 3478.765 kb on + strand at 3478.765 kb on + strand at 3478.766 kb on - strand at 3478.785 kb on + strand at 3478.785 kb on + strand at 3478.785 kb on + strand at 3478.786 kb on - strand at 3478.786 kb on - strand at 3478.786 kb on - strand at 3478.804 kb on - strand at 3478.880 kb on + strand, within AO356_15360 at 3479.215 kb on + strand at 3480.252 kb on - strand at 3480.252 kb on - strand at 3480.252 kb on - strand at 3480.293 kb on - strand at 3480.293 kb on - strand at 3480.919 kb on - strand at 3480.951 kb on - strand at 3480.951 kb on - strand at 3480.951 kb on - strand at 3480.951 kb on - strand at 3480.989 kb on - strand at 3480.989 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Rifampicin 0.0024 mg/ml remove 3,478,301 + AO356_15355 0.66 +0.5 3,478,394 + AO356_15355 0.73 +0.4 3,478,394 + AO356_15355 0.73 +0.5 3,478,394 + AO356_15355 0.73 -0.7 3,478,395 - AO356_15355 0.73 -0.8 3,478,660 - +0.7 3,478,765 + -1.3 3,478,765 + -1.7 3,478,766 - -0.5 3,478,785 + +0.7 3,478,785 + -1.7 3,478,785 + +0.4 3,478,786 - -0.8 3,478,786 - -0.6 3,478,786 - -0.2 3,478,804 - +1.0 3,478,880 + AO356_15360 0.35 +0.8 3,479,215 + -0.2 3,480,252 - -0.2 3,480,252 - -1.1 3,480,252 - +0.3 3,480,293 - +1.1 3,480,293 - -0.2 3,480,919 - +0.1 3,480,951 - -0.2 3,480,951 - +0.5 3,480,951 - -0.0 3,480,951 - +2.6 3,480,989 - +0.2 3,480,989 - +1.4
Or see this region's nucleotide sequence