Experiment: Rifampicin 0.0024 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AO356_14330 and AO356_14335 are separated by 116 nucleotides AO356_14335 and AO356_14340 overlap by 4 nucleotides AO356_14340 and AO356_14345 overlap by 4 nucleotides
AO356_14330: AO356_14330 - magnesium transporter ApaG, at 3,258,743 to 3,259,123
_14330
AO356_14335: AO356_14335 - rRNA methyltransferase, at 3,259,240 to 3,260,058
_14335
AO356_14340: AO356_14340 - 4-hydroxythreonine-4-phosphate dehydrogenase, at 3,260,055 to 3,261,044
_14340
AO356_14345: AO356_14345 - molecular chaperone SurA, at 3,261,041 to 3,262,321
_14345
Position (kb)
3260
3261
3262 Strain fitness (log2 ratio)
-2
-1
0
1 at 3259.130 kb on - strand at 3259.130 kb on - strand at 3259.130 kb on - strand at 3259.130 kb on - strand at 3259.130 kb on - strand at 3259.130 kb on - strand at 3259.138 kb on - strand at 3259.179 kb on + strand at 3259.179 kb on + strand at 3259.180 kb on - strand at 3259.180 kb on - strand at 3259.180 kb on - strand at 3259.180 kb on - strand at 3259.188 kb on + strand at 3259.195 kb on + strand at 3259.198 kb on + strand at 3259.199 kb on - strand at 3259.199 kb on - strand at 3259.199 kb on - strand at 3259.214 kb on - strand at 3259.294 kb on + strand at 3259.327 kb on + strand, within AO356_14335 at 3259.328 kb on - strand, within AO356_14335 at 3259.484 kb on - strand, within AO356_14335 at 3259.484 kb on - strand, within AO356_14335 at 3259.572 kb on - strand, within AO356_14335 at 3259.721 kb on + strand, within AO356_14335 at 3259.722 kb on - strand, within AO356_14335 at 3259.722 kb on - strand, within AO356_14335 at 3259.722 kb on - strand, within AO356_14335 at 3259.722 kb on - strand, within AO356_14335 at 3259.770 kb on + strand, within AO356_14335 at 3260.045 kb on + strand at 3260.046 kb on - strand at 3260.058 kb on + strand at 3260.058 kb on + strand at 3260.059 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Rifampicin 0.0024 mg/ml remove 3,259,130 - +0.7 3,259,130 - -0.5 3,259,130 - +0.5 3,259,130 - +1.1 3,259,130 - +0.5 3,259,130 - -1.3 3,259,138 - +0.5 3,259,179 + -0.5 3,259,179 + -1.0 3,259,180 - -0.5 3,259,180 - -0.0 3,259,180 - -0.6 3,259,180 - +0.1 3,259,188 + +0.6 3,259,195 + +0.5 3,259,198 + +0.3 3,259,199 - +0.9 3,259,199 - -2.6 3,259,199 - +0.1 3,259,214 - -0.4 3,259,294 + +0.0 3,259,327 + AO356_14335 0.11 -2.2 3,259,328 - AO356_14335 0.11 +0.8 3,259,484 - AO356_14335 0.30 -1.5 3,259,484 - AO356_14335 0.30 +0.1 3,259,572 - AO356_14335 0.41 +0.2 3,259,721 + AO356_14335 0.59 -0.1 3,259,722 - AO356_14335 0.59 -0.1 3,259,722 - AO356_14335 0.59 -1.1 3,259,722 - AO356_14335 0.59 +0.3 3,259,722 - AO356_14335 0.59 -0.4 3,259,770 + AO356_14335 0.65 +0.4 3,260,045 + +0.1 3,260,046 - -1.9 3,260,058 + -0.1 3,260,058 + +0.1 3,260,059 - -1.0
Or see this region's nucleotide sequence