Experiment: Rifampicin 0.0024 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AO356_07520 and AO356_07525 are separated by 59 nucleotides AO356_07525 and AO356_07530 overlap by 4 nucleotides AO356_07530 and AO356_07535 are separated by 7 nucleotides AO356_07535 and AO356_07540 are separated by 118 nucleotides AO356_07540 and AO356_07545 are separated by 328 nucleotides
AO356_07520: AO356_07520 - hypothetical protein, at 1,665,635 to 1,666,162
_07520
AO356_07525: AO356_07525 - protein RnfH, at 1,666,222 to 1,666,524
_07525
AO356_07530: AO356_07530 - ribosome association toxin RatA, at 1,666,521 to 1,666,964
_07530
AO356_07535: AO356_07535 - symporter, at 1,666,972 to 1,668,375
_07535
AO356_07540: AO356_07540 - SsrA-binding protein, at 1,668,494 to 1,668,976
_07540
AO356_07545: AO356_07545 - transcriptional regulator PdhR, at 1,669,305 to 1,670,072
_07545
Position (kb)
1666
1667
1668
1669 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2
3 at 1666.160 kb on + strand at 1666.224 kb on - strand at 1666.502 kb on + strand at 1666.502 kb on + strand at 1666.503 kb on - strand at 1666.503 kb on - strand at 1666.503 kb on - strand at 1666.514 kb on - strand at 1666.514 kb on - strand at 1666.514 kb on - strand at 1666.967 kb on - strand at 1666.967 kb on - strand at 1666.967 kb on - strand at 1666.967 kb on - strand at 1666.967 kb on - strand at 1666.967 kb on - strand at 1666.967 kb on - strand at 1666.967 kb on - strand at 1666.967 kb on - strand at 1666.967 kb on - strand at 1667.000 kb on - strand at 1667.000 kb on - strand at 1667.000 kb on - strand at 1667.025 kb on - strand at 1667.025 kb on - strand at 1667.025 kb on - strand at 1667.267 kb on - strand, within AO356_07535 at 1667.267 kb on - strand, within AO356_07535 at 1667.267 kb on - strand, within AO356_07535 at 1667.267 kb on - strand, within AO356_07535 at 1667.267 kb on - strand, within AO356_07535 at 1667.267 kb on - strand, within AO356_07535 at 1667.267 kb on - strand, within AO356_07535 at 1667.267 kb on - strand, within AO356_07535 at 1667.267 kb on - strand, within AO356_07535 at 1667.269 kb on - strand, within AO356_07535 at 1667.269 kb on - strand, within AO356_07535 at 1667.269 kb on - strand, within AO356_07535 at 1667.269 kb on - strand, within AO356_07535 at 1667.269 kb on - strand, within AO356_07535 at 1667.269 kb on - strand, within AO356_07535 at 1667.269 kb on - strand, within AO356_07535 at 1667.269 kb on - strand, within AO356_07535 at 1667.269 kb on - strand, within AO356_07535 at 1667.269 kb on - strand, within AO356_07535 at 1667.269 kb on - strand, within AO356_07535 at 1667.269 kb on - strand, within AO356_07535 at 1667.367 kb on - strand, within AO356_07535 at 1667.367 kb on - strand, within AO356_07535 at 1667.367 kb on - strand, within AO356_07535 at 1667.367 kb on - strand, within AO356_07535 at 1667.367 kb on - strand, within AO356_07535 at 1667.367 kb on - strand, within AO356_07535 at 1667.367 kb on - strand, within AO356_07535 at 1667.367 kb on - strand, within AO356_07535 at 1667.367 kb on - strand, within AO356_07535 at 1667.636 kb on + strand, within AO356_07535 at 1667.636 kb on + strand, within AO356_07535 at 1667.637 kb on - strand, within AO356_07535 at 1667.637 kb on - strand, within AO356_07535 at 1667.637 kb on - strand, within AO356_07535 at 1667.637 kb on - strand, within AO356_07535 at 1667.637 kb on - strand, within AO356_07535 at 1667.637 kb on - strand, within AO356_07535 at 1667.645 kb on + strand, within AO356_07535 at 1667.646 kb on - strand, within AO356_07535 at 1667.646 kb on - strand, within AO356_07535 at 1667.646 kb on - strand, within AO356_07535 at 1667.787 kb on - strand, within AO356_07535 at 1667.787 kb on - strand, within AO356_07535 at 1667.952 kb on - strand, within AO356_07535 at 1667.952 kb on - strand, within AO356_07535 at 1668.011 kb on + strand, within AO356_07535 at 1668.011 kb on + strand, within AO356_07535 at 1668.011 kb on + strand, within AO356_07535 at 1668.011 kb on + strand, within AO356_07535 at 1668.012 kb on - strand, within AO356_07535 at 1668.012 kb on - strand, within AO356_07535 at 1668.012 kb on - strand, within AO356_07535 at 1668.042 kb on - strand, within AO356_07535 at 1668.042 kb on - strand, within AO356_07535 at 1668.042 kb on - strand, within AO356_07535 at 1668.042 kb on - strand, within AO356_07535 at 1668.127 kb on + strand, within AO356_07535 at 1668.232 kb on + strand, within AO356_07535 at 1668.233 kb on - strand, within AO356_07535 at 1668.233 kb on - strand, within AO356_07535 at 1668.233 kb on - strand, within AO356_07535 at 1668.233 kb on - strand, within AO356_07535 at 1668.251 kb on + strand at 1668.252 kb on - strand at 1668.266 kb on + strand at 1668.267 kb on - strand at 1668.267 kb on - strand at 1668.283 kb on - strand at 1668.283 kb on - strand at 1668.286 kb on - strand at 1668.320 kb on - strand at 1668.320 kb on - strand at 1668.320 kb on - strand at 1668.456 kb on + strand at 1668.479 kb on + strand at 1668.479 kb on + strand at 1668.479 kb on + strand at 1668.480 kb on - strand at 1668.480 kb on - strand at 1668.481 kb on + strand at 1668.481 kb on + strand at 1668.482 kb on - strand at 1668.482 kb on - strand at 1668.558 kb on - strand, within AO356_07540 at 1668.558 kb on - strand, within AO356_07540 at 1668.609 kb on + strand, within AO356_07540 at 1668.695 kb on - strand, within AO356_07540 at 1669.168 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Rifampicin 0.0024 mg/ml remove 1,666,160 + -0.6 1,666,224 - +1.0 1,666,502 + -0.4 1,666,502 + -0.8 1,666,503 - +0.6 1,666,503 - +2.1 1,666,503 - -1.2 1,666,514 - +0.9 1,666,514 - +1.0 1,666,514 - +0.8 1,666,967 - +1.6 1,666,967 - +2.3 1,666,967 - -0.3 1,666,967 - +1.2 1,666,967 - +0.5 1,666,967 - +2.2 1,666,967 - +1.8 1,666,967 - +0.5 1,666,967 - +0.5 1,666,967 - -0.2 1,667,000 - -1.1 1,667,000 - -1.3 1,667,000 - +0.3 1,667,025 - +1.2 1,667,025 - +1.2 1,667,025 - -0.0 1,667,267 - AO356_07535 0.21 -0.8 1,667,267 - AO356_07535 0.21 +0.4 1,667,267 - AO356_07535 0.21 -1.0 1,667,267 - AO356_07535 0.21 +0.0 1,667,267 - AO356_07535 0.21 +0.8 1,667,267 - AO356_07535 0.21 +0.9 1,667,267 - AO356_07535 0.21 -0.0 1,667,267 - AO356_07535 0.21 +0.4 1,667,267 - AO356_07535 0.21 -0.1 1,667,269 - AO356_07535 0.21 -0.4 1,667,269 - AO356_07535 0.21 +0.5 1,667,269 - AO356_07535 0.21 +0.3 1,667,269 - AO356_07535 0.21 -0.0 1,667,269 - AO356_07535 0.21 -1.3 1,667,269 - AO356_07535 0.21 +0.1 1,667,269 - AO356_07535 0.21 +0.2 1,667,269 - AO356_07535 0.21 +0.3 1,667,269 - AO356_07535 0.21 +0.4 1,667,269 - AO356_07535 0.21 +0.0 1,667,269 - AO356_07535 0.21 -0.1 1,667,269 - AO356_07535 0.21 -0.4 1,667,367 - AO356_07535 0.28 -1.0 1,667,367 - AO356_07535 0.28 +0.0 1,667,367 - AO356_07535 0.28 -0.1 1,667,367 - AO356_07535 0.28 +0.1 1,667,367 - AO356_07535 0.28 +0.7 1,667,367 - AO356_07535 0.28 -0.2 1,667,367 - AO356_07535 0.28 -1.2 1,667,367 - AO356_07535 0.28 +0.2 1,667,367 - AO356_07535 0.28 -0.4 1,667,636 + AO356_07535 0.47 +1.9 1,667,636 + AO356_07535 0.47 +3.2 1,667,637 - AO356_07535 0.47 -1.7 1,667,637 - AO356_07535 0.47 +1.1 1,667,637 - AO356_07535 0.47 -1.3 1,667,637 - AO356_07535 0.47 +0.9 1,667,637 - AO356_07535 0.47 +0.2 1,667,637 - AO356_07535 0.47 -0.2 1,667,645 + AO356_07535 0.48 +3.1 1,667,646 - AO356_07535 0.48 +0.3 1,667,646 - AO356_07535 0.48 -0.5 1,667,646 - AO356_07535 0.48 -0.3 1,667,787 - AO356_07535 0.58 +0.8 1,667,787 - AO356_07535 0.58 -2.8 1,667,952 - AO356_07535 0.70 -0.1 1,667,952 - AO356_07535 0.70 -0.5 1,668,011 + AO356_07535 0.74 +2.1 1,668,011 + AO356_07535 0.74 +1.6 1,668,011 + AO356_07535 0.74 +2.3 1,668,011 + AO356_07535 0.74 +1.3 1,668,012 - AO356_07535 0.74 +1.4 1,668,012 - AO356_07535 0.74 +0.4 1,668,012 - AO356_07535 0.74 +0.0 1,668,042 - AO356_07535 0.76 -0.9 1,668,042 - AO356_07535 0.76 -0.1 1,668,042 - AO356_07535 0.76 +0.7 1,668,042 - AO356_07535 0.76 -0.1 1,668,127 + AO356_07535 0.82 +2.2 1,668,232 + AO356_07535 0.90 +1.8 1,668,233 - AO356_07535 0.90 -0.5 1,668,233 - AO356_07535 0.90 -1.2 1,668,233 - AO356_07535 0.90 +1.5 1,668,233 - AO356_07535 0.90 -0.2 1,668,251 + +3.3 1,668,252 - +0.3 1,668,266 + +1.1 1,668,267 - +0.6 1,668,267 - +0.4 1,668,283 - +0.7 1,668,283 - -0.8 1,668,286 - -1.2 1,668,320 - +0.5 1,668,320 - +0.2 1,668,320 - +0.3 1,668,456 + +0.5 1,668,479 + +1.4 1,668,479 + +1.7 1,668,479 + +0.3 1,668,480 - +1.2 1,668,480 - +1.9 1,668,481 + +2.7 1,668,481 + +2.1 1,668,482 - +2.4 1,668,482 - +2.2 1,668,558 - AO356_07540 0.13 +2.1 1,668,558 - AO356_07540 0.13 +3.0 1,668,609 + AO356_07540 0.24 +0.5 1,668,695 - AO356_07540 0.42 +3.2 1,669,168 + -0.6
Or see this region's nucleotide sequence