Experiment: Rifampicin 0.0024 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AO356_04345 and AO356_04350 are separated by 12 nucleotides AO356_04350 and AO356_04355 are separated by 32 nucleotides AO356_04355 and AO356_04360 are separated by 135 nucleotides
AO356_04345: AO356_04345 - hypothetical protein, at 989,255 to 989,797
_04345
AO356_04350: AO356_04350 - glutamine amidotransferase, at 989,810 to 990,586
_04350
AO356_04355: AO356_04355 - MFS transporter, at 990,619 to 991,116
_04355
AO356_04360: AO356_04360 - peptidase S9, at 991,252 to 993,306
_04360
Position (kb) 990
991
992 Strain fitness (log2 ratio) -2
-1
0
1
2 at 989.716 kb on - strand, within AO356_04345 at 989.780 kb on + strand at 989.780 kb on + strand at 989.781 kb on - strand at 989.781 kb on - strand at 989.784 kb on + strand at 989.784 kb on + strand at 989.784 kb on + strand at 989.784 kb on + strand at 989.784 kb on + strand at 989.785 kb on - strand at 989.797 kb on + strand at 989.797 kb on + strand at 989.797 kb on + strand at 989.797 kb on + strand at 989.797 kb on + strand at 989.798 kb on - strand at 989.798 kb on - strand at 989.798 kb on - strand at 989.811 kb on + strand at 990.039 kb on + strand, within AO356_04350 at 990.138 kb on - strand, within AO356_04350 at 990.225 kb on + strand, within AO356_04350 at 990.355 kb on + strand, within AO356_04350 at 990.366 kb on - strand, within AO356_04350 at 990.465 kb on + strand, within AO356_04350 at 990.465 kb on + strand, within AO356_04350 at 990.465 kb on + strand, within AO356_04350 at 990.465 kb on + strand, within AO356_04350 at 990.465 kb on + strand, within AO356_04350 at 990.465 kb on + strand, within AO356_04350 at 990.465 kb on + strand, within AO356_04350 at 990.465 kb on + strand, within AO356_04350 at 990.465 kb on + strand, within AO356_04350 at 990.466 kb on - strand, within AO356_04350 at 990.466 kb on - strand, within AO356_04350 at 990.466 kb on - strand, within AO356_04350 at 990.466 kb on - strand, within AO356_04350 at 990.466 kb on - strand, within AO356_04350 at 990.575 kb on + strand at 990.576 kb on - strand at 990.620 kb on + strand at 990.620 kb on + strand at 990.620 kb on + strand at 990.621 kb on - strand at 990.621 kb on - strand at 990.819 kb on - strand, within AO356_04355 at 990.843 kb on - strand, within AO356_04355 at 990.843 kb on - strand, within AO356_04355 at 990.843 kb on - strand, within AO356_04355 at 991.070 kb on + strand at 991.091 kb on + strand at 991.092 kb on - strand at 991.140 kb on + strand at 991.140 kb on + strand at 991.140 kb on + strand at 991.140 kb on + strand at 991.140 kb on + strand at 991.140 kb on + strand at 991.141 kb on - strand at 991.141 kb on - strand at 991.141 kb on - strand at 991.141 kb on - strand at 991.142 kb on + strand at 991.142 kb on + strand at 991.142 kb on + strand at 991.142 kb on + strand at 991.142 kb on + strand at 991.143 kb on - strand at 991.143 kb on - strand at 991.143 kb on - strand at 991.143 kb on - strand at 991.143 kb on - strand at 991.143 kb on - strand at 991.143 kb on - strand at 991.143 kb on - strand at 991.143 kb on - strand at 991.143 kb on - strand at 991.143 kb on - strand at 991.231 kb on + strand at 991.231 kb on + strand at 991.232 kb on - strand at 991.232 kb on - strand at 991.232 kb on - strand at 991.260 kb on - strand at 991.358 kb on - strand at 991.358 kb on - strand at 991.358 kb on - strand at 991.358 kb on - strand at 991.378 kb on + strand at 991.378 kb on + strand at 991.378 kb on + strand at 991.379 kb on - strand at 991.379 kb on - strand at 991.379 kb on - strand at 991.489 kb on + strand, within AO356_04360 at 991.490 kb on - strand, within AO356_04360 at 991.495 kb on + strand, within AO356_04360 at 991.495 kb on + strand, within AO356_04360 at 991.495 kb on + strand, within AO356_04360 at 991.495 kb on + strand, within AO356_04360 at 991.495 kb on + strand, within AO356_04360 at 991.496 kb on - strand, within AO356_04360 at 991.498 kb on + strand, within AO356_04360 at 991.498 kb on + strand, within AO356_04360 at 991.498 kb on + strand, within AO356_04360 at 991.499 kb on - strand, within AO356_04360 at 991.499 kb on - strand, within AO356_04360 at 991.499 kb on - strand, within AO356_04360 at 991.499 kb on - strand, within AO356_04360 at 991.499 kb on - strand, within AO356_04360 at 991.681 kb on + strand, within AO356_04360 at 991.711 kb on + strand, within AO356_04360 at 991.711 kb on + strand, within AO356_04360 at 991.711 kb on + strand, within AO356_04360 at 991.711 kb on + strand, within AO356_04360 at 991.711 kb on + strand, within AO356_04360 at 991.711 kb on + strand, within AO356_04360 at 991.711 kb on + strand, within AO356_04360 at 991.711 kb on + strand, within AO356_04360 at 991.711 kb on + strand, within AO356_04360 at 991.712 kb on - strand, within AO356_04360 at 991.712 kb on - strand, within AO356_04360 at 991.712 kb on - strand, within AO356_04360 at 991.712 kb on - strand, within AO356_04360 at 991.712 kb on - strand, within AO356_04360 at 991.712 kb on - strand, within AO356_04360 at 991.712 kb on - strand, within AO356_04360 at 991.712 kb on - strand, within AO356_04360 at 991.712 kb on - strand, within AO356_04360 at 992.063 kb on - strand, within AO356_04360
Per-strain Table
Position Strand Gene LocusTag Fraction Rifampicin 0.0024 mg/ml remove 989,716 - AO356_04345 0.85 -0.7 989,780 + -1.1 989,780 + +0.0 989,781 - +0.3 989,781 - -0.1 989,784 + -0.2 989,784 + +0.2 989,784 + -0.5 989,784 + -1.1 989,784 + -0.6 989,785 - +0.5 989,797 + +0.2 989,797 + +0.4 989,797 + -1.9 989,797 + -0.5 989,797 + -1.5 989,798 - +0.4 989,798 - -0.7 989,798 - -0.4 989,811 + -0.7 990,039 + AO356_04350 0.29 +0.2 990,138 - AO356_04350 0.42 -0.1 990,225 + AO356_04350 0.53 -0.1 990,355 + AO356_04350 0.70 -0.4 990,366 - AO356_04350 0.72 -1.4 990,465 + AO356_04350 0.84 -0.3 990,465 + AO356_04350 0.84 -0.3 990,465 + AO356_04350 0.84 -0.1 990,465 + AO356_04350 0.84 -0.0 990,465 + AO356_04350 0.84 +0.7 990,465 + AO356_04350 0.84 +1.5 990,465 + AO356_04350 0.84 -0.2 990,465 + AO356_04350 0.84 -0.2 990,465 + AO356_04350 0.84 -0.5 990,466 - AO356_04350 0.84 -0.5 990,466 - AO356_04350 0.84 +0.5 990,466 - AO356_04350 0.84 +0.1 990,466 - AO356_04350 0.84 +0.7 990,466 - AO356_04350 0.84 -0.5 990,575 + -0.1 990,576 - +0.4 990,620 + -0.1 990,620 + -1.2 990,620 + +1.4 990,621 - +0.4 990,621 - +1.0 990,819 - AO356_04355 0.40 +0.9 990,843 - AO356_04355 0.45 +1.7 990,843 - AO356_04355 0.45 +0.9 990,843 - AO356_04355 0.45 +1.6 991,070 + +1.5 991,091 + +1.3 991,092 - +1.4 991,140 + +1.0 991,140 + -0.3 991,140 + +1.9 991,140 + +1.0 991,140 + -0.1 991,140 + +1.7 991,141 - -0.9 991,141 - +0.5 991,141 - +0.3 991,141 - +0.5 991,142 + +0.9 991,142 + +0.8 991,142 + +1.3 991,142 + +0.9 991,142 + +0.5 991,143 - +0.6 991,143 - -0.4 991,143 - -0.1 991,143 - +0.4 991,143 - -0.1 991,143 - +0.7 991,143 - -0.2 991,143 - +0.0 991,143 - +0.7 991,143 - +0.7 991,143 - +0.0 991,231 + -0.3 991,231 + +1.0 991,232 - +1.4 991,232 - -0.4 991,232 - +1.6 991,260 - -1.0 991,358 - +0.3 991,358 - -1.0 991,358 - -0.9 991,358 - -0.3 991,378 + +0.6 991,378 + +0.9 991,378 + +0.2 991,379 - -0.5 991,379 - -0.7 991,379 - -0.9 991,489 + AO356_04360 0.12 -1.4 991,490 - AO356_04360 0.12 -0.1 991,495 + AO356_04360 0.12 +0.2 991,495 + AO356_04360 0.12 +0.3 991,495 + AO356_04360 0.12 +0.5 991,495 + AO356_04360 0.12 +0.1 991,495 + AO356_04360 0.12 -1.4 991,496 - AO356_04360 0.12 -0.0 991,498 + AO356_04360 0.12 +1.3 991,498 + AO356_04360 0.12 -0.4 991,498 + AO356_04360 0.12 +1.1 991,499 - AO356_04360 0.12 -0.9 991,499 - AO356_04360 0.12 -0.2 991,499 - AO356_04360 0.12 -0.2 991,499 - AO356_04360 0.12 -0.5 991,499 - AO356_04360 0.12 -1.1 991,681 + AO356_04360 0.21 -1.0 991,711 + AO356_04360 0.22 +0.7 991,711 + AO356_04360 0.22 -0.3 991,711 + AO356_04360 0.22 -0.1 991,711 + AO356_04360 0.22 +0.8 991,711 + AO356_04360 0.22 +0.3 991,711 + AO356_04360 0.22 +0.1 991,711 + AO356_04360 0.22 +0.3 991,711 + AO356_04360 0.22 -1.2 991,711 + AO356_04360 0.22 -0.2 991,712 - AO356_04360 0.22 +0.5 991,712 - AO356_04360 0.22 -0.4 991,712 - AO356_04360 0.22 +0.3 991,712 - AO356_04360 0.22 -1.0 991,712 - AO356_04360 0.22 -0.9 991,712 - AO356_04360 0.22 -0.7 991,712 - AO356_04360 0.22 +0.3 991,712 - AO356_04360 0.22 -1.7 991,712 - AO356_04360 0.22 -0.6 992,063 - AO356_04360 0.39 -0.4
Or see this region's nucleotide sequence