Strain Fitness in Pseudomonas fluorescens FW300-N2C3 around AO356_04255

Experiment: Rifampicin 0.0024 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAO356_04250 and AO356_04255 are separated by 139 nucleotidesAO356_04255 and AO356_04260 are separated by 141 nucleotides AO356_04250: AO356_04250 - multidrug ABC transporter ATP-binding protein, at 963,692 to 965,524 _04250 AO356_04255: AO356_04255 - acyltransferase superfamily protein, at 965,664 to 966,788 _04255 AO356_04260: AO356_04260 - porin, at 966,930 to 968,240 _04260 Position (kb) 965 966 967Strain fitness (log2 ratio) -2 -1 0 1 2at 964.802 kb on + strand, within AO356_04250at 964.892 kb on - strand, within AO356_04250at 964.925 kb on + strand, within AO356_04250at 964.926 kb on - strand, within AO356_04250at 964.926 kb on - strand, within AO356_04250at 964.926 kb on - strand, within AO356_04250at 964.926 kb on - strand, within AO356_04250at 964.926 kb on - strand, within AO356_04250at 965.064 kb on - strand, within AO356_04250at 965.474 kb on + strandat 965.474 kb on + strandat 965.474 kb on + strandat 965.474 kb on + strandat 965.475 kb on - strandat 965.475 kb on - strandat 965.475 kb on - strandat 965.475 kb on - strandat 965.475 kb on - strandat 965.526 kb on + strandat 965.526 kb on + strandat 965.527 kb on - strandat 965.527 kb on - strandat 965.593 kb on + strandat 965.594 kb on - strandat 965.594 kb on - strandat 965.596 kb on - strandat 965.779 kb on + strand, within AO356_04255at 965.780 kb on - strand, within AO356_04255at 965.780 kb on - strand, within AO356_04255at 965.893 kb on + strand, within AO356_04255at 965.893 kb on + strand, within AO356_04255at 965.894 kb on - strand, within AO356_04255at 965.894 kb on - strand, within AO356_04255at 965.894 kb on - strand, within AO356_04255at 965.894 kb on - strand, within AO356_04255at 965.894 kb on - strand, within AO356_04255at 966.080 kb on - strand, within AO356_04255at 966.103 kb on + strand, within AO356_04255at 966.104 kb on - strand, within AO356_04255at 966.124 kb on + strand, within AO356_04255at 966.292 kb on + strand, within AO356_04255at 966.293 kb on - strand, within AO356_04255at 966.400 kb on + strand, within AO356_04255at 966.401 kb on - strand, within AO356_04255at 966.505 kb on + strand, within AO356_04255at 966.506 kb on - strand, within AO356_04255at 966.508 kb on + strand, within AO356_04255at 966.508 kb on + strand, within AO356_04255at 966.508 kb on + strand, within AO356_04255at 966.509 kb on - strand, within AO356_04255at 966.509 kb on - strand, within AO356_04255at 966.509 kb on - strand, within AO356_04255at 966.559 kb on + strand, within AO356_04255at 966.559 kb on + strand, within AO356_04255at 966.559 kb on + strand, within AO356_04255at 966.559 kb on + strand, within AO356_04255at 966.560 kb on - strand, within AO356_04255at 966.560 kb on - strand, within AO356_04255at 966.560 kb on - strand, within AO356_04255at 966.560 kb on - strand, within AO356_04255at 966.569 kb on - strand, within AO356_04255at 966.569 kb on - strand, within AO356_04255at 966.851 kb on + strandat 966.852 kb on - strandat 966.890 kb on + strandat 966.913 kb on + strandat 966.913 kb on + strandat 966.914 kb on - strandat 966.914 kb on - strandat 966.914 kb on - strandat 966.914 kb on - strandat 966.940 kb on + strandat 966.940 kb on + strandat 966.940 kb on + strandat 966.940 kb on + strandat 966.940 kb on + strandat 966.941 kb on - strandat 966.941 kb on - strandat 966.941 kb on - strandat 966.941 kb on - strandat 967.018 kb on + strandat 967.018 kb on + strandat 967.018 kb on + strandat 967.018 kb on + strandat 967.018 kb on + strandat 967.018 kb on + strandat 967.019 kb on - strandat 967.019 kb on - strandat 967.051 kb on + strandat 967.160 kb on - strand, within AO356_04260at 967.223 kb on + strand, within AO356_04260at 967.224 kb on - strand, within AO356_04260at 967.224 kb on - strand, within AO356_04260at 967.224 kb on - strand, within AO356_04260at 967.224 kb on - strand, within AO356_04260at 967.224 kb on - strand, within AO356_04260at 967.224 kb on - strand, within AO356_04260at 967.224 kb on - strand, within AO356_04260at 967.225 kb on + strand, within AO356_04260at 967.225 kb on + strand, within AO356_04260at 967.252 kb on + strand, within AO356_04260at 967.252 kb on + strand, within AO356_04260at 967.252 kb on + strand, within AO356_04260at 967.253 kb on - strand, within AO356_04260at 967.253 kb on - strand, within AO356_04260at 967.253 kb on - strand, within AO356_04260at 967.253 kb on - strand, within AO356_04260at 967.267 kb on + strand, within AO356_04260at 967.267 kb on + strand, within AO356_04260at 967.267 kb on + strand, within AO356_04260at 967.267 kb on + strand, within AO356_04260at 967.267 kb on + strand, within AO356_04260at 967.268 kb on - strand, within AO356_04260at 967.268 kb on - strand, within AO356_04260at 967.330 kb on + strand, within AO356_04260at 967.330 kb on + strand, within AO356_04260at 967.330 kb on + strand, within AO356_04260at 967.330 kb on + strand, within AO356_04260at 967.330 kb on + strand, within AO356_04260at 967.330 kb on + strand, within AO356_04260at 967.330 kb on + strand, within AO356_04260at 967.330 kb on + strand, within AO356_04260at 967.330 kb on + strand, within AO356_04260at 967.330 kb on + strand, within AO356_04260at 967.330 kb on + strand, within AO356_04260at 967.330 kb on + strand, within AO356_04260at 967.331 kb on - strand, within AO356_04260at 967.331 kb on - strand, within AO356_04260at 967.331 kb on - strand, within AO356_04260at 967.331 kb on - strand, within AO356_04260at 967.331 kb on - strand, within AO356_04260at 967.331 kb on - strand, within AO356_04260at 967.331 kb on - strand, within AO356_04260at 967.331 kb on - strand, within AO356_04260at 967.331 kb on - strand, within AO356_04260at 967.331 kb on - strand, within AO356_04260at 967.331 kb on - strand, within AO356_04260at 967.331 kb on - strand, within AO356_04260at 967.331 kb on - strand, within AO356_04260at 967.331 kb on - strand, within AO356_04260at 967.331 kb on - strand, within AO356_04260at 967.331 kb on - strand, within AO356_04260at 967.331 kb on - strand, within AO356_04260at 967.331 kb on - strand, within AO356_04260at 967.552 kb on - strand, within AO356_04260at 967.681 kb on + strand, within AO356_04260at 967.682 kb on - strand, within AO356_04260at 967.682 kb on - strand, within AO356_04260at 967.682 kb on - strand, within AO356_04260at 967.759 kb on + strand, within AO356_04260at 967.769 kb on + strand, within AO356_04260

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Per-strain Table

Position Strand Gene LocusTag Fraction Rifampicin 0.0024 mg/ml
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964,802 + AO356_04250 0.61 -0.1
964,892 - AO356_04250 0.65 +0.7
964,925 + AO356_04250 0.67 +0.4
964,926 - AO356_04250 0.67 -0.9
964,926 - AO356_04250 0.67 +0.1
964,926 - AO356_04250 0.67 +0.7
964,926 - AO356_04250 0.67 +0.4
964,926 - AO356_04250 0.67 -1.0
965,064 - AO356_04250 0.75 -1.8
965,474 + +0.1
965,474 + +1.3
965,474 + -0.5
965,474 + -0.8
965,475 - -0.5
965,475 - -0.3
965,475 - +0.7
965,475 - +1.4
965,475 - -0.6
965,526 + +0.7
965,526 + -0.1
965,527 - -0.3
965,527 - -1.8
965,593 + +0.5
965,594 - +0.6
965,594 - +0.3
965,596 - +0.2
965,779 + AO356_04255 0.10 -0.6
965,780 - AO356_04255 0.10 +0.4
965,780 - AO356_04255 0.10 +0.3
965,893 + AO356_04255 0.20 +0.2
965,893 + AO356_04255 0.20 -0.0
965,894 - AO356_04255 0.20 -0.9
965,894 - AO356_04255 0.20 -0.7
965,894 - AO356_04255 0.20 +0.7
965,894 - AO356_04255 0.20 -0.3
965,894 - AO356_04255 0.20 +1.7
966,080 - AO356_04255 0.37 -0.0
966,103 + AO356_04255 0.39 -0.6
966,104 - AO356_04255 0.39 -0.7
966,124 + AO356_04255 0.41 +1.0
966,292 + AO356_04255 0.56 +0.6
966,293 - AO356_04255 0.56 +1.2
966,400 + AO356_04255 0.65 -0.0
966,401 - AO356_04255 0.66 -0.3
966,505 + AO356_04255 0.75 -0.7
966,506 - AO356_04255 0.75 +1.9
966,508 + AO356_04255 0.75 +0.9
966,508 + AO356_04255 0.75 +1.2
966,508 + AO356_04255 0.75 -0.5
966,509 - AO356_04255 0.75 -0.5
966,509 - AO356_04255 0.75 +0.3
966,509 - AO356_04255 0.75 +0.3
966,559 + AO356_04255 0.80 +0.4
966,559 + AO356_04255 0.80 -0.1
966,559 + AO356_04255 0.80 +0.3
966,559 + AO356_04255 0.80 +1.2
966,560 - AO356_04255 0.80 +0.1
966,560 - AO356_04255 0.80 -0.5
966,560 - AO356_04255 0.80 +0.9
966,560 - AO356_04255 0.80 -0.3
966,569 - AO356_04255 0.80 +0.6
966,569 - AO356_04255 0.80 -0.1
966,851 + +0.7
966,852 - +0.1
966,890 + +0.4
966,913 + +0.8
966,913 + -0.5
966,914 - +0.7
966,914 - -0.1
966,914 - -0.7
966,914 - +0.9
966,940 + -0.2
966,940 + +0.3
966,940 + -1.2
966,940 + +0.2
966,940 + -0.2
966,941 - -0.7
966,941 - -0.8
966,941 - +1.4
966,941 - -0.3
967,018 + +1.0
967,018 + +0.6
967,018 + +0.8
967,018 + -0.4
967,018 + -0.6
967,018 + -0.1
967,019 - +1.1
967,019 - -0.4
967,051 + +0.9
967,160 - AO356_04260 0.18 +0.3
967,223 + AO356_04260 0.22 +0.3
967,224 - AO356_04260 0.22 -1.1
967,224 - AO356_04260 0.22 +0.1
967,224 - AO356_04260 0.22 +0.9
967,224 - AO356_04260 0.22 -0.4
967,224 - AO356_04260 0.22 +0.4
967,224 - AO356_04260 0.22 -0.0
967,224 - AO356_04260 0.22 -0.5
967,225 + AO356_04260 0.23 +1.2
967,225 + AO356_04260 0.23 -0.6
967,252 + AO356_04260 0.25 +0.4
967,252 + AO356_04260 0.25 -0.2
967,252 + AO356_04260 0.25 -1.2
967,253 - AO356_04260 0.25 -0.0
967,253 - AO356_04260 0.25 +1.9
967,253 - AO356_04260 0.25 -0.9
967,253 - AO356_04260 0.25 +0.2
967,267 + AO356_04260 0.26 -0.1
967,267 + AO356_04260 0.26 +0.0
967,267 + AO356_04260 0.26 +0.7
967,267 + AO356_04260 0.26 -0.1
967,267 + AO356_04260 0.26 -1.1
967,268 - AO356_04260 0.26 -1.8
967,268 - AO356_04260 0.26 -0.3
967,330 + AO356_04260 0.31 +1.6
967,330 + AO356_04260 0.31 -0.7
967,330 + AO356_04260 0.31 -1.5
967,330 + AO356_04260 0.31 +0.6
967,330 + AO356_04260 0.31 -0.8
967,330 + AO356_04260 0.31 +0.6
967,330 + AO356_04260 0.31 -0.3
967,330 + AO356_04260 0.31 -0.3
967,330 + AO356_04260 0.31 -0.5
967,330 + AO356_04260 0.31 -0.4
967,330 + AO356_04260 0.31 -0.3
967,330 + AO356_04260 0.31 +0.3
967,331 - AO356_04260 0.31 +0.1
967,331 - AO356_04260 0.31 +1.4
967,331 - AO356_04260 0.31 +0.3
967,331 - AO356_04260 0.31 -0.2
967,331 - AO356_04260 0.31 -0.4
967,331 - AO356_04260 0.31 -0.7
967,331 - AO356_04260 0.31 +0.4
967,331 - AO356_04260 0.31 +0.1
967,331 - AO356_04260 0.31 +0.3
967,331 - AO356_04260 0.31 +0.5
967,331 - AO356_04260 0.31 -0.9
967,331 - AO356_04260 0.31 -1.6
967,331 - AO356_04260 0.31 +0.2
967,331 - AO356_04260 0.31 +0.7
967,331 - AO356_04260 0.31 +0.3
967,331 - AO356_04260 0.31 -1.2
967,331 - AO356_04260 0.31 +0.2
967,331 - AO356_04260 0.31 +1.9
967,552 - AO356_04260 0.47 -1.1
967,681 + AO356_04260 0.57 +0.1
967,682 - AO356_04260 0.57 +0.1
967,682 - AO356_04260 0.57 +2.3
967,682 - AO356_04260 0.57 -0.6
967,759 + AO356_04260 0.63 +0.8
967,769 + AO356_04260 0.64 -1.0

Or see this region's nucleotide sequence