Strain Fitness in Pseudomonas fluorescens FW300-N2C3 around AO356_03345

Experiment: Rifampicin 0.0024 mg/ml

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntAO356_03340 and AO356_03345 are separated by 55 nucleotidesAO356_03345 and AO356_03350 are separated by 114 nucleotides AO356_03340: AO356_03340 - hypothetical protein, at 742,584 to 743,486 _03340 AO356_03345: AO356_03345 - hypothetical protein, at 743,542 to 745,536 _03345 AO356_03350: AO356_03350 - glycosyl transferase, at 745,651 to 746,667 _03350 Position (kb) 743 744 745 746Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 742.655 kb on + strandat 742.655 kb on + strandat 742.658 kb on - strandat 742.669 kb on - strandat 742.738 kb on - strand, within AO356_03340at 742.755 kb on + strand, within AO356_03340at 742.756 kb on - strand, within AO356_03340at 742.935 kb on + strand, within AO356_03340at 742.944 kb on - strand, within AO356_03340at 742.944 kb on - strand, within AO356_03340at 742.953 kb on + strand, within AO356_03340at 742.954 kb on - strand, within AO356_03340at 743.165 kb on - strand, within AO356_03340at 743.167 kb on - strand, within AO356_03340at 743.167 kb on - strand, within AO356_03340at 743.168 kb on + strand, within AO356_03340at 743.169 kb on - strand, within AO356_03340at 743.253 kb on + strand, within AO356_03340at 743.253 kb on + strand, within AO356_03340at 743.258 kb on - strand, within AO356_03340at 743.369 kb on - strand, within AO356_03340at 743.497 kb on - strandat 743.497 kb on - strandat 743.497 kb on - strandat 743.497 kb on - strandat 743.531 kb on + strandat 743.531 kb on + strandat 743.531 kb on + strandat 743.532 kb on - strandat 743.532 kb on - strandat 743.532 kb on - strandat 743.532 kb on - strandat 743.567 kb on + strandat 743.567 kb on + strandat 743.567 kb on + strandat 743.688 kb on + strandat 743.950 kb on - strand, within AO356_03345at 743.999 kb on + strand, within AO356_03345at 743.999 kb on + strand, within AO356_03345at 744.091 kb on + strand, within AO356_03345at 744.114 kb on + strand, within AO356_03345at 744.115 kb on - strand, within AO356_03345at 744.139 kb on + strand, within AO356_03345at 744.140 kb on - strand, within AO356_03345at 744.245 kb on - strand, within AO356_03345at 744.309 kb on + strand, within AO356_03345at 744.352 kb on - strand, within AO356_03345at 744.354 kb on + strand, within AO356_03345at 744.354 kb on + strand, within AO356_03345at 744.355 kb on - strand, within AO356_03345at 744.378 kb on + strand, within AO356_03345at 744.378 kb on + strand, within AO356_03345at 744.379 kb on - strand, within AO356_03345at 744.380 kb on + strand, within AO356_03345at 744.466 kb on - strand, within AO356_03345at 744.470 kb on - strand, within AO356_03345at 744.470 kb on - strand, within AO356_03345at 744.472 kb on + strand, within AO356_03345at 744.530 kb on + strand, within AO356_03345at 744.546 kb on + strand, within AO356_03345at 744.547 kb on - strand, within AO356_03345at 744.634 kb on + strand, within AO356_03345at 744.685 kb on + strand, within AO356_03345at 744.817 kb on + strand, within AO356_03345at 744.817 kb on + strand, within AO356_03345at 744.817 kb on + strand, within AO356_03345at 744.818 kb on - strand, within AO356_03345at 744.907 kb on - strand, within AO356_03345at 744.915 kb on - strand, within AO356_03345at 744.915 kb on - strand, within AO356_03345at 744.951 kb on + strand, within AO356_03345at 744.951 kb on + strand, within AO356_03345at 744.951 kb on + strand, within AO356_03345at 744.952 kb on - strand, within AO356_03345at 744.952 kb on - strand, within AO356_03345at 744.952 kb on - strand, within AO356_03345at 744.952 kb on - strand, within AO356_03345at 744.952 kb on - strand, within AO356_03345at 744.952 kb on - strand, within AO356_03345at 745.040 kb on + strand, within AO356_03345at 745.041 kb on - strand, within AO356_03345at 745.041 kb on - strand, within AO356_03345at 745.044 kb on + strand, within AO356_03345at 745.044 kb on + strand, within AO356_03345at 745.045 kb on - strand, within AO356_03345at 745.045 kb on - strand, within AO356_03345at 745.045 kb on - strand, within AO356_03345at 745.045 kb on - strand, within AO356_03345at 745.078 kb on - strand, within AO356_03345at 745.175 kb on + strand, within AO356_03345at 745.179 kb on + strand, within AO356_03345at 745.179 kb on + strand, within AO356_03345at 745.188 kb on + strand, within AO356_03345at 745.209 kb on + strand, within AO356_03345at 745.209 kb on + strand, within AO356_03345at 745.221 kb on - strand, within AO356_03345at 745.226 kb on + strand, within AO356_03345at 745.226 kb on + strand, within AO356_03345at 745.227 kb on - strand, within AO356_03345at 745.319 kb on + strand, within AO356_03345at 745.320 kb on - strand, within AO356_03345at 745.320 kb on - strand, within AO356_03345at 745.320 kb on - strand, within AO356_03345at 745.320 kb on - strand, within AO356_03345at 745.320 kb on - strand, within AO356_03345at 745.341 kb on + strandat 745.341 kb on + strandat 745.483 kb on - strandat 745.536 kb on + strandat 745.537 kb on - strandat 745.596 kb on - strandat 745.596 kb on - strandat 745.596 kb on - strandat 745.596 kb on - strandat 745.596 kb on - strandat 745.622 kb on - strandat 745.709 kb on + strandat 745.710 kb on - strandat 745.718 kb on - strandat 745.720 kb on + strandat 745.720 kb on + strandat 745.875 kb on - strand, within AO356_03350at 745.881 kb on + strand, within AO356_03350at 745.882 kb on - strand, within AO356_03350at 745.882 kb on - strand, within AO356_03350at 745.882 kb on - strand, within AO356_03350at 745.892 kb on - strand, within AO356_03350at 745.911 kb on + strand, within AO356_03350at 745.912 kb on - strand, within AO356_03350at 745.912 kb on - strand, within AO356_03350at 745.912 kb on - strand, within AO356_03350at 745.969 kb on - strand, within AO356_03350at 746.050 kb on - strand, within AO356_03350at 746.098 kb on + strand, within AO356_03350at 746.101 kb on + strand, within AO356_03350at 746.102 kb on - strand, within AO356_03350at 746.219 kb on + strand, within AO356_03350at 746.226 kb on + strand, within AO356_03350at 746.226 kb on + strand, within AO356_03350at 746.227 kb on - strand, within AO356_03350at 746.227 kb on - strand, within AO356_03350at 746.243 kb on + strand, within AO356_03350at 746.460 kb on + strand, within AO356_03350at 746.460 kb on + strand, within AO356_03350at 746.460 kb on + strand, within AO356_03350at 746.460 kb on + strand, within AO356_03350at 746.460 kb on + strand, within AO356_03350at 746.497 kb on + strand, within AO356_03350at 746.509 kb on + strand, within AO356_03350at 746.509 kb on + strand, within AO356_03350at 746.509 kb on + strand, within AO356_03350at 746.510 kb on - strand, within AO356_03350

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Rifampicin 0.0024 mg/ml
remove
742,655 + -1.3
742,655 + -0.4
742,658 - +1.3
742,669 - +1.0
742,738 - AO356_03340 0.17 +0.1
742,755 + AO356_03340 0.19 +0.0
742,756 - AO356_03340 0.19 -0.6
742,935 + AO356_03340 0.39 +0.2
742,944 - AO356_03340 0.40 +0.1
742,944 - AO356_03340 0.40 -0.6
742,953 + AO356_03340 0.41 +2.9
742,954 - AO356_03340 0.41 +0.5
743,165 - AO356_03340 0.64 +1.5
743,167 - AO356_03340 0.65 -1.2
743,167 - AO356_03340 0.65 -0.4
743,168 + AO356_03340 0.65 +0.5
743,169 - AO356_03340 0.65 +0.7
743,253 + AO356_03340 0.74 -1.1
743,253 + AO356_03340 0.74 +0.4
743,258 - AO356_03340 0.75 -1.0
743,369 - AO356_03340 0.87 -0.6
743,497 - -0.4
743,497 - +1.0
743,497 - +0.9
743,497 - +1.5
743,531 + -0.5
743,531 + +0.0
743,531 + +0.3
743,532 - -0.1
743,532 - -0.1
743,532 - -0.4
743,532 - -0.3
743,567 + -1.8
743,567 + -2.5
743,567 + -1.7
743,688 + -1.6
743,950 - AO356_03345 0.20 -1.1
743,999 + AO356_03345 0.23 -0.1
743,999 + AO356_03345 0.23 +1.4
744,091 + AO356_03345 0.28 -0.7
744,114 + AO356_03345 0.29 -2.1
744,115 - AO356_03345 0.29 -1.8
744,139 + AO356_03345 0.30 -0.9
744,140 - AO356_03345 0.30 -0.4
744,245 - AO356_03345 0.35 -1.6
744,309 + AO356_03345 0.38 -0.4
744,352 - AO356_03345 0.41 -1.6
744,354 + AO356_03345 0.41 -0.5
744,354 + AO356_03345 0.41 -3.0
744,355 - AO356_03345 0.41 -1.8
744,378 + AO356_03345 0.42 -1.0
744,378 + AO356_03345 0.42 -2.1
744,379 - AO356_03345 0.42 -0.9
744,380 + AO356_03345 0.42 -2.1
744,466 - AO356_03345 0.46 -1.1
744,470 - AO356_03345 0.47 -1.4
744,470 - AO356_03345 0.47 -0.3
744,472 + AO356_03345 0.47 -2.4
744,530 + AO356_03345 0.50 -0.7
744,546 + AO356_03345 0.50 -1.1
744,547 - AO356_03345 0.50 -2.5
744,634 + AO356_03345 0.55 -0.9
744,685 + AO356_03345 0.57 -1.3
744,817 + AO356_03345 0.64 -0.7
744,817 + AO356_03345 0.64 -2.6
744,817 + AO356_03345 0.64 -1.1
744,818 - AO356_03345 0.64 -1.8
744,907 - AO356_03345 0.68 -2.8
744,915 - AO356_03345 0.69 -2.2
744,915 - AO356_03345 0.69 +0.3
744,951 + AO356_03345 0.71 -2.4
744,951 + AO356_03345 0.71 -0.7
744,951 + AO356_03345 0.71 -1.8
744,952 - AO356_03345 0.71 -0.9
744,952 - AO356_03345 0.71 -0.4
744,952 - AO356_03345 0.71 -1.2
744,952 - AO356_03345 0.71 -2.5
744,952 - AO356_03345 0.71 -1.0
744,952 - AO356_03345 0.71 -2.5
745,040 + AO356_03345 0.75 -1.8
745,041 - AO356_03345 0.75 -3.0
745,041 - AO356_03345 0.75 -2.6
745,044 + AO356_03345 0.75 -0.9
745,044 + AO356_03345 0.75 -1.2
745,045 - AO356_03345 0.75 -2.1
745,045 - AO356_03345 0.75 -1.3
745,045 - AO356_03345 0.75 -1.3
745,045 - AO356_03345 0.75 -1.6
745,078 - AO356_03345 0.77 -0.1
745,175 + AO356_03345 0.82 -1.7
745,179 + AO356_03345 0.82 +0.0
745,179 + AO356_03345 0.82 -2.0
745,188 + AO356_03345 0.83 -2.2
745,209 + AO356_03345 0.84 -0.1
745,209 + AO356_03345 0.84 -0.4
745,221 - AO356_03345 0.84 -0.8
745,226 + AO356_03345 0.84 -1.8
745,226 + AO356_03345 0.84 +0.6
745,227 - AO356_03345 0.84 -2.7
745,319 + AO356_03345 0.89 -1.4
745,320 - AO356_03345 0.89 -0.8
745,320 - AO356_03345 0.89 -1.1
745,320 - AO356_03345 0.89 -0.9
745,320 - AO356_03345 0.89 -0.9
745,320 - AO356_03345 0.89 +0.1
745,341 + -1.1
745,341 + -1.5
745,483 - -0.4
745,536 + -1.7
745,537 - +0.9
745,596 - +0.9
745,596 - +0.5
745,596 - -0.0
745,596 - +0.0
745,596 - -0.3
745,622 - +0.7
745,709 + -1.2
745,710 - -0.1
745,718 - -1.3
745,720 + -1.4
745,720 + -0.9
745,875 - AO356_03350 0.22 -0.9
745,881 + AO356_03350 0.23 -0.6
745,882 - AO356_03350 0.23 +0.7
745,882 - AO356_03350 0.23 -0.1
745,882 - AO356_03350 0.23 -1.3
745,892 - AO356_03350 0.24 +0.5
745,911 + AO356_03350 0.26 -0.7
745,912 - AO356_03350 0.26 -2.2
745,912 - AO356_03350 0.26 -0.1
745,912 - AO356_03350 0.26 -0.7
745,969 - AO356_03350 0.31 -0.1
746,050 - AO356_03350 0.39 -1.6
746,098 + AO356_03350 0.44 -0.3
746,101 + AO356_03350 0.44 -2.1
746,102 - AO356_03350 0.44 +0.6
746,219 + AO356_03350 0.56 -1.4
746,226 + AO356_03350 0.57 +0.6
746,226 + AO356_03350 0.57 -2.1
746,227 - AO356_03350 0.57 +0.3
746,227 - AO356_03350 0.57 -0.9
746,243 + AO356_03350 0.58 -1.8
746,460 + AO356_03350 0.80 -0.9
746,460 + AO356_03350 0.80 -0.8
746,460 + AO356_03350 0.80 -2.4
746,460 + AO356_03350 0.80 -0.9
746,460 + AO356_03350 0.80 -0.9
746,497 + AO356_03350 0.83 -0.9
746,509 + AO356_03350 0.84 -1.9
746,509 + AO356_03350 0.84 -1.7
746,509 + AO356_03350 0.84 -0.3
746,510 - AO356_03350 0.84 -1.1

Or see this region's nucleotide sequence