Strain Fitness in Pseudomonas fluorescens FW300-N2C3 around AO356_03325

Experiment: Rifampicin 0.0024 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAO356_03320 and AO356_03325 are separated by 471 nucleotidesAO356_03325 and AO356_03330 are separated by 15 nucleotidesAO356_03330 and AO356_03335 are separated by 169 nucleotides AO356_03320: AO356_03320 - ethanolamine permease, at 738,271 to 739,635 _03320 AO356_03325: AO356_03325 - hypothetical protein, at 740,107 to 740,958 _03325 AO356_03330: AO356_03330 - GntR family transcriptional regulator, at 740,974 to 741,627 _03330 AO356_03335: AO356_03335 - competence protein ComEA, at 741,797 to 742,132 _03335 Position (kb) 740 741Strain fitness (log2 ratio) -2 -1 0 1 2at 739.166 kb on - strand, within AO356_03320at 739.291 kb on + strand, within AO356_03320at 739.291 kb on + strand, within AO356_03320at 739.375 kb on + strand, within AO356_03320at 739.375 kb on + strand, within AO356_03320at 739.375 kb on + strand, within AO356_03320at 739.375 kb on + strand, within AO356_03320at 739.375 kb on + strand, within AO356_03320at 739.375 kb on + strand, within AO356_03320at 739.376 kb on - strand, within AO356_03320at 739.376 kb on - strand, within AO356_03320at 739.376 kb on - strand, within AO356_03320at 739.376 kb on - strand, within AO356_03320at 739.376 kb on - strand, within AO356_03320at 739.376 kb on - strand, within AO356_03320at 739.376 kb on - strand, within AO356_03320at 739.434 kb on + strand, within AO356_03320at 739.434 kb on + strand, within AO356_03320at 739.434 kb on + strand, within AO356_03320at 739.434 kb on + strand, within AO356_03320at 739.435 kb on - strand, within AO356_03320at 739.570 kb on + strandat 739.570 kb on + strandat 739.571 kb on - strandat 739.658 kb on + strandat 739.659 kb on - strandat 739.659 kb on - strandat 739.661 kb on + strandat 739.661 kb on + strandat 739.662 kb on - strandat 739.662 kb on - strandat 739.662 kb on - strandat 739.662 kb on - strandat 739.691 kb on + strandat 739.691 kb on + strandat 739.692 kb on - strandat 739.692 kb on - strandat 739.698 kb on + strandat 739.698 kb on + strandat 739.699 kb on - strandat 739.699 kb on - strandat 739.699 kb on - strandat 739.754 kb on + strandat 739.754 kb on + strandat 739.755 kb on - strandat 739.764 kb on + strandat 739.764 kb on + strandat 739.765 kb on - strandat 739.765 kb on - strandat 739.782 kb on - strandat 739.995 kb on - strandat 740.108 kb on + strandat 740.108 kb on + strandat 740.108 kb on + strandat 740.108 kb on + strandat 740.109 kb on - strandat 740.109 kb on - strandat 740.156 kb on + strandat 740.210 kb on + strand, within AO356_03325at 740.210 kb on + strand, within AO356_03325at 740.211 kb on - strand, within AO356_03325at 740.211 kb on - strand, within AO356_03325at 740.211 kb on - strand, within AO356_03325at 740.211 kb on - strand, within AO356_03325at 740.211 kb on - strand, within AO356_03325at 740.345 kb on + strand, within AO356_03325at 740.345 kb on + strand, within AO356_03325at 740.345 kb on + strand, within AO356_03325at 740.345 kb on + strand, within AO356_03325at 740.346 kb on - strand, within AO356_03325at 740.346 kb on - strand, within AO356_03325at 740.381 kb on + strand, within AO356_03325at 740.381 kb on + strand, within AO356_03325at 740.381 kb on + strand, within AO356_03325at 740.381 kb on + strand, within AO356_03325at 740.381 kb on + strand, within AO356_03325at 740.382 kb on - strand, within AO356_03325at 740.382 kb on - strand, within AO356_03325at 740.382 kb on - strand, within AO356_03325at 740.382 kb on - strand, within AO356_03325at 740.382 kb on - strand, within AO356_03325at 740.382 kb on - strand, within AO356_03325at 740.382 kb on - strand, within AO356_03325at 740.382 kb on - strand, within AO356_03325at 740.382 kb on - strand, within AO356_03325at 740.382 kb on - strand, within AO356_03325at 740.418 kb on + strand, within AO356_03325at 740.419 kb on - strand, within AO356_03325at 740.419 kb on - strand, within AO356_03325at 740.419 kb on - strand, within AO356_03325at 740.425 kb on + strand, within AO356_03325at 740.425 kb on + strand, within AO356_03325at 740.531 kb on + strand, within AO356_03325at 740.531 kb on + strand, within AO356_03325at 740.531 kb on + strand, within AO356_03325at 740.532 kb on - strand, within AO356_03325at 740.532 kb on - strand, within AO356_03325at 740.592 kb on - strand, within AO356_03325at 740.888 kb on + strandat 740.888 kb on + strandat 740.888 kb on + strandat 740.889 kb on - strandat 740.889 kb on - strandat 740.898 kb on + strandat 740.899 kb on - strandat 740.934 kb on - strandat 740.945 kb on + strandat 740.946 kb on - strandat 740.954 kb on + strandat 740.955 kb on - strandat 740.955 kb on - strandat 740.955 kb on - strandat 741.092 kb on + strand, within AO356_03330at 741.092 kb on + strand, within AO356_03330at 741.092 kb on + strand, within AO356_03330at 741.093 kb on - strand, within AO356_03330at 741.177 kb on + strand, within AO356_03330at 741.178 kb on - strand, within AO356_03330at 741.178 kb on - strand, within AO356_03330at 741.178 kb on - strand, within AO356_03330at 741.178 kb on - strand, within AO356_03330at 741.178 kb on - strand, within AO356_03330at 741.326 kb on + strand, within AO356_03330at 741.327 kb on - strand, within AO356_03330at 741.413 kb on - strand, within AO356_03330at 741.413 kb on - strand, within AO356_03330at 741.442 kb on + strand, within AO356_03330at 741.442 kb on + strand, within AO356_03330at 741.442 kb on + strand, within AO356_03330at 741.442 kb on + strand, within AO356_03330at 741.443 kb on - strand, within AO356_03330at 741.443 kb on - strand, within AO356_03330at 741.443 kb on - strand, within AO356_03330at 741.443 kb on - strand, within AO356_03330at 741.479 kb on - strand, within AO356_03330at 741.512 kb on + strand, within AO356_03330at 741.512 kb on + strand, within AO356_03330at 741.513 kb on - strand, within AO356_03330at 741.513 kb on - strand, within AO356_03330at 741.535 kb on + strand, within AO356_03330at 741.535 kb on + strand, within AO356_03330at 741.546 kb on + strand, within AO356_03330at 741.547 kb on - strand, within AO356_03330at 741.656 kb on + strandat 741.657 kb on - strandat 741.665 kb on + strandat 741.665 kb on + strandat 741.669 kb on + strandat 741.669 kb on + strandat 741.669 kb on + strandat 741.670 kb on - strandat 741.670 kb on - strandat 741.670 kb on - strandat 741.903 kb on + strand, within AO356_03335

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Per-strain Table

Position Strand Gene LocusTag Fraction Rifampicin 0.0024 mg/ml
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739,166 - AO356_03320 0.66 +1.3
739,291 + AO356_03320 0.75 -0.1
739,291 + AO356_03320 0.75 -0.4
739,375 + AO356_03320 0.81 +0.2
739,375 + AO356_03320 0.81 +0.5
739,375 + AO356_03320 0.81 -0.5
739,375 + AO356_03320 0.81 -0.5
739,375 + AO356_03320 0.81 +0.1
739,375 + AO356_03320 0.81 +1.0
739,376 - AO356_03320 0.81 +0.2
739,376 - AO356_03320 0.81 +0.8
739,376 - AO356_03320 0.81 -1.1
739,376 - AO356_03320 0.81 +0.7
739,376 - AO356_03320 0.81 +0.5
739,376 - AO356_03320 0.81 -0.3
739,376 - AO356_03320 0.81 +1.6
739,434 + AO356_03320 0.85 -0.3
739,434 + AO356_03320 0.85 +0.7
739,434 + AO356_03320 0.85 +1.5
739,434 + AO356_03320 0.85 -0.2
739,435 - AO356_03320 0.85 -0.5
739,570 + +0.9
739,570 + +0.2
739,571 - -0.2
739,658 + +0.6
739,659 - -0.1
739,659 - -2.7
739,661 + +0.1
739,661 + +0.6
739,662 - -0.9
739,662 - -0.0
739,662 - -0.7
739,662 - +0.1
739,691 + +0.4
739,691 + -0.4
739,692 - -0.2
739,692 - -0.3
739,698 + -1.1
739,698 + +1.3
739,699 - +0.4
739,699 - +0.3
739,699 - +0.3
739,754 + -0.1
739,754 + -0.2
739,755 - +1.3
739,764 + +0.5
739,764 + -0.4
739,765 - +0.3
739,765 - +0.0
739,782 - -1.6
739,995 - -0.6
740,108 + +0.5
740,108 + -0.4
740,108 + +0.5
740,108 + +0.4
740,109 - -0.7
740,109 - -0.3
740,156 + -0.6
740,210 + AO356_03325 0.12 -0.6
740,210 + AO356_03325 0.12 -0.1
740,211 - AO356_03325 0.12 +0.5
740,211 - AO356_03325 0.12 +0.3
740,211 - AO356_03325 0.12 +0.4
740,211 - AO356_03325 0.12 +0.4
740,211 - AO356_03325 0.12 -0.5
740,345 + AO356_03325 0.28 +0.7
740,345 + AO356_03325 0.28 -0.6
740,345 + AO356_03325 0.28 -0.5
740,345 + AO356_03325 0.28 +0.2
740,346 - AO356_03325 0.28 -0.6
740,346 - AO356_03325 0.28 +1.9
740,381 + AO356_03325 0.32 -0.3
740,381 + AO356_03325 0.32 -0.1
740,381 + AO356_03325 0.32 +1.3
740,381 + AO356_03325 0.32 -0.8
740,381 + AO356_03325 0.32 +0.4
740,382 - AO356_03325 0.32 +0.5
740,382 - AO356_03325 0.32 +1.9
740,382 - AO356_03325 0.32 +0.7
740,382 - AO356_03325 0.32 +0.4
740,382 - AO356_03325 0.32 -0.8
740,382 - AO356_03325 0.32 -0.0
740,382 - AO356_03325 0.32 +1.0
740,382 - AO356_03325 0.32 +0.7
740,382 - AO356_03325 0.32 +0.7
740,382 - AO356_03325 0.32 -1.0
740,418 + AO356_03325 0.37 +0.7
740,419 - AO356_03325 0.37 -0.1
740,419 - AO356_03325 0.37 +0.5
740,419 - AO356_03325 0.37 +0.5
740,425 + AO356_03325 0.37 +0.4
740,425 + AO356_03325 0.37 -1.4
740,531 + AO356_03325 0.50 -2.4
740,531 + AO356_03325 0.50 -0.8
740,531 + AO356_03325 0.50 -0.0
740,532 - AO356_03325 0.50 +0.1
740,532 - AO356_03325 0.50 -1.0
740,592 - AO356_03325 0.57 -0.6
740,888 + +0.3
740,888 + +1.1
740,888 + +0.8
740,889 - -0.4
740,889 - -0.1
740,898 + +0.5
740,899 - +0.8
740,934 - +0.1
740,945 + -0.4
740,946 - -0.1
740,954 + +1.7
740,955 - -0.2
740,955 - -1.2
740,955 - -1.1
741,092 + AO356_03330 0.18 +0.0
741,092 + AO356_03330 0.18 +1.7
741,092 + AO356_03330 0.18 +0.5
741,093 - AO356_03330 0.18 -0.6
741,177 + AO356_03330 0.31 +1.6
741,178 - AO356_03330 0.31 +0.3
741,178 - AO356_03330 0.31 -0.2
741,178 - AO356_03330 0.31 +0.6
741,178 - AO356_03330 0.31 +0.1
741,178 - AO356_03330 0.31 +1.3
741,326 + AO356_03330 0.54 +0.4
741,327 - AO356_03330 0.54 -0.3
741,413 - AO356_03330 0.67 +1.0
741,413 - AO356_03330 0.67 -1.1
741,442 + AO356_03330 0.72 -0.2
741,442 + AO356_03330 0.72 +0.8
741,442 + AO356_03330 0.72 -0.5
741,442 + AO356_03330 0.72 +0.2
741,443 - AO356_03330 0.72 -0.1
741,443 - AO356_03330 0.72 +0.9
741,443 - AO356_03330 0.72 -0.0
741,443 - AO356_03330 0.72 -0.4
741,479 - AO356_03330 0.77 -0.1
741,512 + AO356_03330 0.82 -2.3
741,512 + AO356_03330 0.82 +0.3
741,513 - AO356_03330 0.82 +0.0
741,513 - AO356_03330 0.82 -0.8
741,535 + AO356_03330 0.86 -0.1
741,535 + AO356_03330 0.86 +0.2
741,546 + AO356_03330 0.87 -0.9
741,547 - AO356_03330 0.88 +0.3
741,656 + +0.5
741,657 - -0.1
741,665 + -0.1
741,665 + +0.5
741,669 + +0.7
741,669 + -0.9
741,669 + +0.2
741,670 - +0.4
741,670 - -0.7
741,670 - -0.4
741,903 + AO356_03335 0.32 +0.0

Or see this region's nucleotide sequence