Experiment: Rifampicin 0.0024 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AO356_02480 and AO356_02485 are separated by 94 nucleotides AO356_02485 and AO356_02490 are separated by 76 nucleotides AO356_02490 and AO356_02495 are separated by 126 nucleotides AO356_02495 and AO356_02500 are separated by 66 nucleotides
AO356_02480: AO356_02480 - coproporphyrinogen III oxidase, at 538,668 to 540,050
_02480
AO356_02485: AO356_02485 - transcriptional regulator, at 540,145 to 540,879
_02485
AO356_02490: AO356_02490 - adenine phosphoribosyltransferase, at 540,956 to 541,504
_02490
AO356_02495: AO356_02495 - recombination protein RecR, at 541,631 to 542,233
_02495
AO356_02500: AO356_02500 - 2-alkenal reductase, at 542,300 to 543,334
_02500
Position (kb) 540
541
542 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 540.006 kb on + strand at 540.006 kb on + strand at 540.006 kb on + strand at 540.007 kb on - strand at 540.007 kb on - strand at 540.007 kb on - strand at 540.044 kb on + strand at 540.093 kb on - strand at 540.115 kb on + strand at 540.116 kb on - strand at 540.116 kb on - strand at 540.116 kb on - strand at 540.116 kb on - strand at 540.366 kb on + strand, within AO356_02485 at 540.367 kb on - strand, within AO356_02485 at 540.530 kb on + strand, within AO356_02485 at 540.531 kb on - strand, within AO356_02485 at 540.606 kb on - strand, within AO356_02485 at 540.736 kb on + strand, within AO356_02485 at 540.793 kb on + strand, within AO356_02485 at 540.918 kb on + strand at 540.918 kb on + strand at 540.918 kb on + strand at 540.918 kb on + strand at 540.918 kb on + strand at 540.919 kb on - strand at 540.919 kb on - strand at 541.100 kb on + strand, within AO356_02490 at 541.100 kb on + strand, within AO356_02490 at 541.101 kb on - strand, within AO356_02490 at 541.173 kb on - strand, within AO356_02490 at 541.230 kb on + strand, within AO356_02490 at 541.230 kb on + strand, within AO356_02490 at 541.230 kb on + strand, within AO356_02490 at 541.231 kb on - strand, within AO356_02490 at 541.231 kb on - strand, within AO356_02490 at 541.502 kb on + strand at 541.502 kb on + strand at 541.557 kb on + strand at 541.632 kb on + strand at 541.770 kb on + strand, within AO356_02495 at 541.770 kb on + strand, within AO356_02495 at 541.771 kb on - strand, within AO356_02495 at 541.927 kb on - strand, within AO356_02495 at 541.959 kb on + strand, within AO356_02495 at 541.959 kb on + strand, within AO356_02495 at 541.959 kb on + strand, within AO356_02495 at 541.959 kb on + strand, within AO356_02495 at 541.959 kb on + strand, within AO356_02495 at 541.960 kb on - strand, within AO356_02495 at 542.057 kb on + strand, within AO356_02495 at 542.057 kb on + strand, within AO356_02495 at 542.072 kb on + strand, within AO356_02495 at 542.073 kb on - strand, within AO356_02495 at 542.073 kb on - strand, within AO356_02495 at 542.251 kb on + strand at 542.251 kb on + strand at 542.251 kb on + strand at 542.251 kb on + strand at 542.252 kb on - strand at 542.252 kb on - strand at 542.252 kb on - strand at 542.270 kb on - strand at 542.270 kb on - strand at 542.270 kb on - strand at 542.297 kb on + strand at 542.297 kb on + strand at 542.298 kb on - strand at 542.360 kb on - strand at 542.488 kb on + strand, within AO356_02500
Per-strain Table
Position Strand Gene LocusTag Fraction Rifampicin 0.0024 mg/ml remove 540,006 + +0.9 540,006 + +0.4 540,006 + +0.1 540,007 - +0.5 540,007 - +0.9 540,007 - +0.4 540,044 + +0.8 540,093 - -0.4 540,115 + -0.9 540,116 - +1.7 540,116 - +0.5 540,116 - -0.5 540,116 - -0.2 540,366 + AO356_02485 0.30 +0.1 540,367 - AO356_02485 0.30 +0.4 540,530 + AO356_02485 0.52 +0.1 540,531 - AO356_02485 0.53 +1.6 540,606 - AO356_02485 0.63 +1.2 540,736 + AO356_02485 0.80 -0.7 540,793 + AO356_02485 0.88 -1.5 540,918 + -0.4 540,918 + -0.0 540,918 + -1.0 540,918 + +0.4 540,918 + +0.2 540,919 - -0.3 540,919 - -0.5 541,100 + AO356_02490 0.26 -0.1 541,100 + AO356_02490 0.26 +0.0 541,101 - AO356_02490 0.26 +0.4 541,173 - AO356_02490 0.40 -1.1 541,230 + AO356_02490 0.50 -0.4 541,230 + AO356_02490 0.50 +0.8 541,230 + AO356_02490 0.50 +0.5 541,231 - AO356_02490 0.50 +2.2 541,231 - AO356_02490 0.50 +0.6 541,502 + +0.0 541,502 + -2.0 541,557 + +0.6 541,632 + +1.7 541,770 + AO356_02495 0.23 +0.1 541,770 + AO356_02495 0.23 -1.2 541,771 - AO356_02495 0.23 -0.5 541,927 - AO356_02495 0.49 -0.3 541,959 + AO356_02495 0.54 -1.2 541,959 + AO356_02495 0.54 -0.0 541,959 + AO356_02495 0.54 +1.0 541,959 + AO356_02495 0.54 -0.5 541,959 + AO356_02495 0.54 -0.2 541,960 - AO356_02495 0.55 -0.5 542,057 + AO356_02495 0.71 -2.8 542,057 + AO356_02495 0.71 +0.9 542,072 + AO356_02495 0.73 -1.0 542,073 - AO356_02495 0.73 -0.9 542,073 - AO356_02495 0.73 -0.8 542,251 + -1.3 542,251 + -0.4 542,251 + -1.2 542,251 + +0.8 542,252 - +0.1 542,252 - -1.0 542,252 - -0.5 542,270 - -0.4 542,270 - +0.7 542,270 - +0.6 542,297 + -0.7 542,297 + +0.4 542,298 - -0.7 542,360 - +0.4 542,488 + AO356_02500 0.18 -0.2
Or see this region's nucleotide sequence