Strain Fitness in Pseudomonas fluorescens FW300-N2C3 around AO356_02395

Experiment: Rifampicin 0.0024 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAO356_02390 and AO356_02395 are separated by 77 nucleotidesAO356_02395 and AO356_02400 are separated by 160 nucleotidesAO356_02400 and AO356_02405 are separated by 96 nucleotides AO356_02390: AO356_02390 - CAAX protease, at 521,616 to 522,404 _02390 AO356_02395: AO356_02395 - chemotaxis protein, at 522,482 to 524,047 _02395 AO356_02400: AO356_02400 - alpha/beta hydrolase, at 524,208 to 524,900 _02400 AO356_02405: AO356_02405 - cytochrome C oxidase Cbb3, at 524,997 to 526,421 _02405 Position (kb) 522 523 524 525Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 521.544 kb on + strandat 521.564 kb on + strandat 521.565 kb on - strandat 521.577 kb on + strandat 521.615 kb on + strandat 521.615 kb on + strandat 521.615 kb on + strandat 521.615 kb on + strandat 521.615 kb on + strandat 521.615 kb on + strandat 521.615 kb on + strandat 521.616 kb on - strandat 521.616 kb on - strandat 521.661 kb on + strandat 521.679 kb on + strandat 521.680 kb on - strandat 521.725 kb on + strand, within AO356_02390at 521.726 kb on - strand, within AO356_02390at 521.898 kb on + strand, within AO356_02390at 521.898 kb on + strand, within AO356_02390at 521.898 kb on + strand, within AO356_02390at 521.898 kb on + strand, within AO356_02390at 521.898 kb on + strand, within AO356_02390at 521.899 kb on - strand, within AO356_02390at 521.899 kb on - strand, within AO356_02390at 521.899 kb on - strand, within AO356_02390at 521.899 kb on - strand, within AO356_02390at 521.899 kb on - strand, within AO356_02390at 521.899 kb on - strand, within AO356_02390at 521.899 kb on - strand, within AO356_02390at 522.100 kb on + strand, within AO356_02390at 522.101 kb on - strand, within AO356_02390at 522.101 kb on - strand, within AO356_02390at 522.101 kb on - strand, within AO356_02390at 522.104 kb on + strand, within AO356_02390at 522.104 kb on + strand, within AO356_02390at 522.104 kb on + strand, within AO356_02390at 522.104 kb on + strand, within AO356_02390at 522.104 kb on + strand, within AO356_02390at 522.104 kb on + strand, within AO356_02390at 522.104 kb on + strand, within AO356_02390at 522.104 kb on + strand, within AO356_02390at 522.104 kb on + strand, within AO356_02390at 522.105 kb on - strand, within AO356_02390at 522.105 kb on - strand, within AO356_02390at 522.105 kb on - strand, within AO356_02390at 522.105 kb on - strand, within AO356_02390at 522.105 kb on - strand, within AO356_02390at 522.108 kb on - strand, within AO356_02390at 522.108 kb on - strand, within AO356_02390at 522.115 kb on + strand, within AO356_02390at 522.115 kb on + strand, within AO356_02390at 522.115 kb on + strand, within AO356_02390at 522.115 kb on + strand, within AO356_02390at 522.115 kb on + strand, within AO356_02390at 522.153 kb on + strand, within AO356_02390at 522.188 kb on + strand, within AO356_02390at 522.189 kb on - strand, within AO356_02390at 522.189 kb on - strand, within AO356_02390at 522.189 kb on - strand, within AO356_02390at 522.189 kb on - strand, within AO356_02390at 522.189 kb on - strand, within AO356_02390at 522.380 kb on - strandat 522.380 kb on - strandat 522.383 kb on + strandat 522.383 kb on + strandat 522.383 kb on + strandat 522.384 kb on - strandat 522.384 kb on - strandat 522.388 kb on - strandat 522.421 kb on + strandat 522.421 kb on + strandat 522.432 kb on - strandat 522.474 kb on + strandat 522.474 kb on + strandat 522.474 kb on + strandat 522.474 kb on + strandat 522.475 kb on - strandat 522.475 kb on - strandat 522.475 kb on - strandat 522.572 kb on - strandat 522.575 kb on + strandat 522.575 kb on + strandat 522.575 kb on + strandat 522.575 kb on + strandat 522.576 kb on - strandat 522.576 kb on - strandat 522.576 kb on - strandat 522.576 kb on - strandat 522.685 kb on + strand, within AO356_02395at 522.685 kb on + strand, within AO356_02395at 522.685 kb on + strand, within AO356_02395at 522.685 kb on + strand, within AO356_02395at 522.685 kb on + strand, within AO356_02395at 522.685 kb on + strand, within AO356_02395at 522.685 kb on + strand, within AO356_02395at 522.686 kb on - strand, within AO356_02395at 522.686 kb on - strand, within AO356_02395at 522.686 kb on - strand, within AO356_02395at 522.686 kb on - strand, within AO356_02395at 522.686 kb on - strand, within AO356_02395at 522.686 kb on - strand, within AO356_02395at 522.686 kb on - strand, within AO356_02395at 522.774 kb on - strand, within AO356_02395at 522.774 kb on - strand, within AO356_02395at 522.774 kb on - strand, within AO356_02395at 522.796 kb on + strand, within AO356_02395at 522.797 kb on - strand, within AO356_02395at 522.812 kb on + strand, within AO356_02395at 522.813 kb on - strand, within AO356_02395at 522.869 kb on + strand, within AO356_02395at 522.869 kb on + strand, within AO356_02395at 522.870 kb on - strand, within AO356_02395at 523.133 kb on + strand, within AO356_02395at 523.133 kb on + strand, within AO356_02395at 523.134 kb on - strand, within AO356_02395at 523.134 kb on - strand, within AO356_02395at 523.134 kb on - strand, within AO356_02395at 523.659 kb on + strand, within AO356_02395at 523.659 kb on + strand, within AO356_02395at 523.660 kb on - strand, within AO356_02395at 524.019 kb on - strandat 524.206 kb on + strandat 524.207 kb on - strandat 524.467 kb on + strand, within AO356_02400at 524.467 kb on + strand, within AO356_02400at 524.467 kb on + strand, within AO356_02400at 524.467 kb on + strand, within AO356_02400at 524.468 kb on - strand, within AO356_02400at 524.468 kb on - strand, within AO356_02400at 524.468 kb on - strand, within AO356_02400at 524.468 kb on - strand, within AO356_02400at 524.468 kb on - strand, within AO356_02400at 524.468 kb on - strand, within AO356_02400at 524.578 kb on + strand, within AO356_02400at 524.578 kb on + strand, within AO356_02400at 524.578 kb on + strand, within AO356_02400at 524.579 kb on - strand, within AO356_02400at 524.597 kb on - strand, within AO356_02400at 524.597 kb on - strand, within AO356_02400at 524.597 kb on - strand, within AO356_02400at 524.597 kb on - strand, within AO356_02400at 524.677 kb on + strand, within AO356_02400at 524.677 kb on + strand, within AO356_02400at 524.677 kb on + strand, within AO356_02400at 524.677 kb on + strand, within AO356_02400at 524.678 kb on - strand, within AO356_02400at 524.678 kb on - strand, within AO356_02400at 524.924 kb on + strandat 524.924 kb on + strandat 524.925 kb on - strandat 524.925 kb on - strandat 524.925 kb on - strandat 524.926 kb on + strandat 524.927 kb on - strandat 525.008 kb on + strandat 525.008 kb on + strandat 525.008 kb on + strandat 525.008 kb on + strandat 525.008 kb on + strandat 525.009 kb on - strandat 525.009 kb on - strandat 525.014 kb on + strandat 525.015 kb on - strandat 525.021 kb on + strandat 525.021 kb on + strandat 525.022 kb on - strandat 525.027 kb on + strandat 525.027 kb on + strandat 525.027 kb on + strandat 525.028 kb on - strandat 525.028 kb on - strandat 525.028 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Rifampicin 0.0024 mg/ml
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521,544 + +2.0
521,564 + +0.5
521,565 - +0.7
521,577 + +0.0
521,615 + -0.3
521,615 + +0.3
521,615 + -1.3
521,615 + +0.6
521,615 + -0.9
521,615 + +0.7
521,615 + -0.1
521,616 - -0.4
521,616 - +0.3
521,661 + -0.7
521,679 + +2.4
521,680 - -0.1
521,725 + AO356_02390 0.14 -0.2
521,726 - AO356_02390 0.14 +0.7
521,898 + AO356_02390 0.36 -2.5
521,898 + AO356_02390 0.36 -0.6
521,898 + AO356_02390 0.36 -0.0
521,898 + AO356_02390 0.36 +0.7
521,898 + AO356_02390 0.36 +0.3
521,899 - AO356_02390 0.36 -0.0
521,899 - AO356_02390 0.36 +1.7
521,899 - AO356_02390 0.36 -0.3
521,899 - AO356_02390 0.36 +0.2
521,899 - AO356_02390 0.36 -1.3
521,899 - AO356_02390 0.36 +2.6
521,899 - AO356_02390 0.36 +0.3
522,100 + AO356_02390 0.61 +0.6
522,101 - AO356_02390 0.61 +0.5
522,101 - AO356_02390 0.61 -2.0
522,101 - AO356_02390 0.61 +0.1
522,104 + AO356_02390 0.62 +0.5
522,104 + AO356_02390 0.62 -0.2
522,104 + AO356_02390 0.62 -0.0
522,104 + AO356_02390 0.62 +0.2
522,104 + AO356_02390 0.62 -1.7
522,104 + AO356_02390 0.62 -0.1
522,104 + AO356_02390 0.62 -0.0
522,104 + AO356_02390 0.62 +0.2
522,104 + AO356_02390 0.62 -0.6
522,105 - AO356_02390 0.62 +0.6
522,105 - AO356_02390 0.62 +0.9
522,105 - AO356_02390 0.62 +0.3
522,105 - AO356_02390 0.62 +0.2
522,105 - AO356_02390 0.62 -0.3
522,108 - AO356_02390 0.62 -0.0
522,108 - AO356_02390 0.62 -0.0
522,115 + AO356_02390 0.63 -0.8
522,115 + AO356_02390 0.63 -0.5
522,115 + AO356_02390 0.63 -0.9
522,115 + AO356_02390 0.63 +0.7
522,115 + AO356_02390 0.63 -0.3
522,153 + AO356_02390 0.68 -0.9
522,188 + AO356_02390 0.72 +0.4
522,189 - AO356_02390 0.73 +1.3
522,189 - AO356_02390 0.73 +0.1
522,189 - AO356_02390 0.73 +0.2
522,189 - AO356_02390 0.73 -2.9
522,189 - AO356_02390 0.73 +0.6
522,380 - -0.3
522,380 - +0.4
522,383 + +0.3
522,383 + +1.3
522,383 + +0.4
522,384 - +0.4
522,384 - +0.1
522,388 - +0.4
522,421 + -0.1
522,421 + +0.0
522,432 - +0.2
522,474 + +1.4
522,474 + +0.3
522,474 + -0.7
522,474 + +0.5
522,475 - +2.1
522,475 - -0.2
522,475 - -1.1
522,572 - -0.2
522,575 + +0.9
522,575 + +1.1
522,575 + +0.2
522,575 + -0.7
522,576 - -0.1
522,576 - -0.8
522,576 - +0.8
522,576 - +0.1
522,685 + AO356_02395 0.13 -0.3
522,685 + AO356_02395 0.13 +0.2
522,685 + AO356_02395 0.13 -0.1
522,685 + AO356_02395 0.13 -0.7
522,685 + AO356_02395 0.13 +0.0
522,685 + AO356_02395 0.13 +1.6
522,685 + AO356_02395 0.13 +0.8
522,686 - AO356_02395 0.13 -0.4
522,686 - AO356_02395 0.13 +0.0
522,686 - AO356_02395 0.13 -0.3
522,686 - AO356_02395 0.13 -0.6
522,686 - AO356_02395 0.13 -0.3
522,686 - AO356_02395 0.13 -0.9
522,686 - AO356_02395 0.13 -2.8
522,774 - AO356_02395 0.19 -0.1
522,774 - AO356_02395 0.19 -0.6
522,774 - AO356_02395 0.19 -0.2
522,796 + AO356_02395 0.20 -0.0
522,797 - AO356_02395 0.20 -0.1
522,812 + AO356_02395 0.21 -0.4
522,813 - AO356_02395 0.21 +0.4
522,869 + AO356_02395 0.25 -0.2
522,869 + AO356_02395 0.25 -1.8
522,870 - AO356_02395 0.25 -0.4
523,133 + AO356_02395 0.42 +0.2
523,133 + AO356_02395 0.42 -0.9
523,134 - AO356_02395 0.42 -0.4
523,134 - AO356_02395 0.42 -0.6
523,134 - AO356_02395 0.42 +0.1
523,659 + AO356_02395 0.75 +0.3
523,659 + AO356_02395 0.75 -0.6
523,660 - AO356_02395 0.75 -0.4
524,019 - +0.9
524,206 + +0.3
524,207 - -1.1
524,467 + AO356_02400 0.37 -0.1
524,467 + AO356_02400 0.37 -0.4
524,467 + AO356_02400 0.37 +0.3
524,467 + AO356_02400 0.37 +0.5
524,468 - AO356_02400 0.38 -0.1
524,468 - AO356_02400 0.38 +0.6
524,468 - AO356_02400 0.38 -2.2
524,468 - AO356_02400 0.38 -0.2
524,468 - AO356_02400 0.38 +0.1
524,468 - AO356_02400 0.38 +0.7
524,578 + AO356_02400 0.53 -0.1
524,578 + AO356_02400 0.53 +0.3
524,578 + AO356_02400 0.53 -0.7
524,579 - AO356_02400 0.54 +0.6
524,597 - AO356_02400 0.56 -2.2
524,597 - AO356_02400 0.56 +0.7
524,597 - AO356_02400 0.56 -0.1
524,597 - AO356_02400 0.56 -0.6
524,677 + AO356_02400 0.68 +0.4
524,677 + AO356_02400 0.68 +0.9
524,677 + AO356_02400 0.68 -0.5
524,677 + AO356_02400 0.68 +0.1
524,678 - AO356_02400 0.68 -0.1
524,678 - AO356_02400 0.68 -0.4
524,924 + +0.6
524,924 + +1.1
524,925 - -1.3
524,925 - +0.2
524,925 - -0.1
524,926 + -0.0
524,927 - +0.2
525,008 + +0.3
525,008 + -0.0
525,008 + +0.5
525,008 + -1.3
525,008 + -0.1
525,009 - +1.0
525,009 - +1.8
525,014 + +0.4
525,015 - +0.5
525,021 + +0.4
525,021 + -0.6
525,022 - -0.4
525,027 + -1.6
525,027 + +1.0
525,027 + +1.3
525,028 - -0.6
525,028 - -0.9
525,028 - +0.0

Or see this region's nucleotide sequence