Experiment: Rifampicin 0.0024 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AO356_02030 and AO356_02035 overlap by 4 nucleotides AO356_02035 and AO356_02040 overlap by 4 nucleotides AO356_02040 and AO356_02045 overlap by 1 nucleotides
AO356_02030: AO356_02030 - baseplate assembly protein, at 445,269 to 445,841
_02030
AO356_02035: AO356_02035 - baseplate assembly protein, at 445,838 to 446,182
_02035
AO356_02040: AO356_02040 - baseplate assembly protein, at 446,179 to 447,090
_02040
AO356_02045: AO356_02045 - phage tail protein, at 447,090 to 447,707
_02045
Position (kb) 445
446
447 Strain fitness (log2 ratio) -1
0
1
2 at 444.869 kb on + strand at 444.965 kb on - strand at 445.112 kb on + strand at 445.113 kb on - strand at 445.137 kb on + strand at 445.218 kb on + strand at 445.218 kb on + strand at 445.218 kb on + strand at 445.280 kb on - strand at 445.569 kb on + strand, within AO356_02030 at 445.704 kb on + strand, within AO356_02030 at 445.705 kb on - strand, within AO356_02030 at 445.705 kb on - strand, within AO356_02030 at 445.944 kb on - strand, within AO356_02035 at 446.231 kb on + strand at 446.232 kb on - strand at 446.232 kb on - strand at 446.246 kb on - strand at 446.275 kb on + strand, within AO356_02040 at 446.275 kb on + strand, within AO356_02040 at 446.275 kb on + strand, within AO356_02040 at 446.276 kb on - strand, within AO356_02040 at 446.613 kb on + strand, within AO356_02040 at 446.613 kb on + strand, within AO356_02040 at 446.613 kb on + strand, within AO356_02040 at 446.614 kb on - strand, within AO356_02040 at 446.614 kb on - strand, within AO356_02040 at 446.617 kb on + strand, within AO356_02040 at 446.617 kb on + strand, within AO356_02040 at 446.617 kb on + strand, within AO356_02040 at 446.617 kb on + strand, within AO356_02040 at 446.617 kb on + strand, within AO356_02040 at 446.617 kb on + strand, within AO356_02040 at 446.617 kb on + strand, within AO356_02040 at 446.618 kb on - strand, within AO356_02040 at 446.618 kb on - strand, within AO356_02040 at 446.618 kb on - strand, within AO356_02040 at 446.618 kb on - strand, within AO356_02040 at 446.618 kb on - strand, within AO356_02040 at 446.618 kb on - strand, within AO356_02040 at 446.618 kb on - strand, within AO356_02040 at 446.762 kb on - strand, within AO356_02040 at 446.830 kb on + strand, within AO356_02040 at 446.830 kb on + strand, within AO356_02040 at 446.831 kb on - strand, within AO356_02040 at 447.041 kb on - strand at 447.052 kb on + strand at 447.052 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Rifampicin 0.0024 mg/ml remove 444,869 + +1.0 444,965 - -0.1 445,112 + +0.6 445,113 - +2.3 445,137 + -1.6 445,218 + +0.5 445,218 + +0.4 445,218 + +0.4 445,280 - +0.5 445,569 + AO356_02030 0.52 -0.3 445,704 + AO356_02030 0.76 +0.0 445,705 - AO356_02030 0.76 -0.8 445,705 - AO356_02030 0.76 -0.5 445,944 - AO356_02035 0.31 +0.1 446,231 + +0.5 446,232 - -0.7 446,232 - +0.9 446,246 - +1.4 446,275 + AO356_02040 0.11 +0.4 446,275 + AO356_02040 0.11 +0.6 446,275 + AO356_02040 0.11 +0.1 446,276 - AO356_02040 0.11 -0.2 446,613 + AO356_02040 0.48 -0.7 446,613 + AO356_02040 0.48 -0.2 446,613 + AO356_02040 0.48 -0.3 446,614 - AO356_02040 0.48 -0.1 446,614 - AO356_02040 0.48 +1.3 446,617 + AO356_02040 0.48 +0.8 446,617 + AO356_02040 0.48 -1.1 446,617 + AO356_02040 0.48 +0.7 446,617 + AO356_02040 0.48 +1.5 446,617 + AO356_02040 0.48 -1.3 446,617 + AO356_02040 0.48 -0.2 446,617 + AO356_02040 0.48 -1.2 446,618 - AO356_02040 0.48 +0.4 446,618 - AO356_02040 0.48 -0.2 446,618 - AO356_02040 0.48 +0.4 446,618 - AO356_02040 0.48 +0.5 446,618 - AO356_02040 0.48 +0.5 446,618 - AO356_02040 0.48 -0.1 446,618 - AO356_02040 0.48 -1.7 446,762 - AO356_02040 0.64 +1.1 446,830 + AO356_02040 0.71 +1.4 446,830 + AO356_02040 0.71 -0.4 446,831 - AO356_02040 0.71 +0.7 447,041 - -0.3 447,052 + -1.2 447,052 + +0.4
Or see this region's nucleotide sequence