Experiment: Rifampicin 0.0024 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AO356_02015 and AO356_02020 overlap by 4 nucleotides AO356_02020 and AO356_02025 overlap by 6 nucleotides AO356_02025 and AO356_02030 are separated by 478 nucleotides
AO356_02015: AO356_02015 - phage tail protein, at 443,412 to 443,888
_02015
AO356_02020: AO356_02020 - phage tail protein, at 443,885 to 444,349
_02020
AO356_02025: AO356_02025 - hypothetical protein, at 444,344 to 444,790
_02025
AO356_02030: AO356_02030 - baseplate assembly protein, at 445,269 to 445,841
_02030
Position (kb) 444
445 Strain fitness (log2 ratio) -1
0
1
2 at 443.389 kb on + strand at 443.390 kb on - strand at 443.390 kb on - strand at 443.548 kb on - strand, within AO356_02015 at 443.560 kb on + strand, within AO356_02015 at 443.561 kb on - strand, within AO356_02015 at 443.581 kb on - strand, within AO356_02015 at 443.728 kb on + strand, within AO356_02015 at 443.728 kb on + strand, within AO356_02015 at 443.728 kb on + strand, within AO356_02015 at 443.728 kb on + strand, within AO356_02015 at 443.729 kb on - strand, within AO356_02015 at 443.729 kb on - strand, within AO356_02015 at 443.729 kb on - strand, within AO356_02015 at 443.780 kb on + strand, within AO356_02015 at 443.807 kb on + strand, within AO356_02015 at 443.807 kb on + strand, within AO356_02015 at 443.807 kb on + strand, within AO356_02015 at 443.808 kb on - strand, within AO356_02015 at 443.808 kb on - strand, within AO356_02015 at 443.808 kb on - strand, within AO356_02015 at 443.808 kb on - strand, within AO356_02015 at 443.808 kb on - strand, within AO356_02015 at 443.808 kb on - strand, within AO356_02015 at 443.808 kb on - strand, within AO356_02015 at 443.843 kb on - strand at 444.044 kb on + strand, within AO356_02020 at 444.044 kb on + strand, within AO356_02020 at 444.044 kb on + strand, within AO356_02020 at 444.045 kb on - strand, within AO356_02020 at 444.045 kb on - strand, within AO356_02020 at 444.164 kb on - strand, within AO356_02020 at 444.166 kb on + strand, within AO356_02020 at 444.216 kb on - strand, within AO356_02020 at 444.277 kb on - strand, within AO356_02020 at 444.277 kb on - strand, within AO356_02020 at 444.277 kb on - strand, within AO356_02020 at 444.301 kb on - strand, within AO356_02020 at 444.358 kb on + strand at 444.405 kb on + strand, within AO356_02025 at 444.669 kb on - strand, within AO356_02025 at 444.724 kb on - strand, within AO356_02025 at 444.734 kb on - strand, within AO356_02025 at 444.749 kb on - strand at 444.869 kb on + strand at 444.965 kb on - strand at 445.112 kb on + strand at 445.113 kb on - strand at 445.137 kb on + strand at 445.218 kb on + strand at 445.218 kb on + strand at 445.218 kb on + strand at 445.280 kb on - strand at 445.569 kb on + strand, within AO356_02030 at 445.704 kb on + strand, within AO356_02030 at 445.705 kb on - strand, within AO356_02030 at 445.705 kb on - strand, within AO356_02030
Per-strain Table
Position Strand Gene LocusTag Fraction Rifampicin 0.0024 mg/ml remove 443,389 + -0.4 443,390 - -0.9 443,390 - +0.9 443,548 - AO356_02015 0.29 -0.8 443,560 + AO356_02015 0.31 -0.7 443,561 - AO356_02015 0.31 -0.2 443,581 - AO356_02015 0.35 +1.7 443,728 + AO356_02015 0.66 +1.2 443,728 + AO356_02015 0.66 -0.4 443,728 + AO356_02015 0.66 +0.8 443,728 + AO356_02015 0.66 -0.5 443,729 - AO356_02015 0.66 -0.2 443,729 - AO356_02015 0.66 -0.6 443,729 - AO356_02015 0.66 -0.1 443,780 + AO356_02015 0.77 +0.7 443,807 + AO356_02015 0.83 +0.3 443,807 + AO356_02015 0.83 -0.8 443,807 + AO356_02015 0.83 +0.0 443,808 - AO356_02015 0.83 +0.6 443,808 - AO356_02015 0.83 -0.1 443,808 - AO356_02015 0.83 +0.4 443,808 - AO356_02015 0.83 +0.3 443,808 - AO356_02015 0.83 +1.3 443,808 - AO356_02015 0.83 +0.3 443,808 - AO356_02015 0.83 +0.7 443,843 - -0.9 444,044 + AO356_02020 0.34 +0.1 444,044 + AO356_02020 0.34 +1.0 444,044 + AO356_02020 0.34 -0.1 444,045 - AO356_02020 0.34 -1.2 444,045 - AO356_02020 0.34 -0.9 444,164 - AO356_02020 0.60 +0.3 444,166 + AO356_02020 0.60 -1.0 444,216 - AO356_02020 0.71 -0.7 444,277 - AO356_02020 0.84 +2.4 444,277 - AO356_02020 0.84 -0.4 444,277 - AO356_02020 0.84 -1.2 444,301 - AO356_02020 0.89 -0.5 444,358 + -0.2 444,405 + AO356_02025 0.14 -0.6 444,669 - AO356_02025 0.73 -0.8 444,724 - AO356_02025 0.85 +0.1 444,734 - AO356_02025 0.87 -0.7 444,749 - +0.3 444,869 + +1.0 444,965 - -0.1 445,112 + +0.6 445,113 - +2.3 445,137 + -1.6 445,218 + +0.5 445,218 + +0.4 445,218 + +0.4 445,280 - +0.5 445,569 + AO356_02030 0.52 -0.3 445,704 + AO356_02030 0.76 +0.0 445,705 - AO356_02030 0.76 -0.8 445,705 - AO356_02030 0.76 -0.5
Or see this region's nucleotide sequence