Experiment: Rifampicin 0.0024 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AO356_00305 and AO356_00310 are separated by 211 nucleotides AO356_00310 and AO356_00315 overlap by 8 nucleotides AO356_00315 and AO356_00320 are separated by 111 nucleotides
AO356_00305: AO356_00305 - hypothetical protein, at 56,659 to 57,279
_00305
AO356_00310: AO356_00310 - hypothetical protein, at 57,491 to 58,111
_00310
AO356_00315: AO356_00315 - nucleotidyltransferase, at 58,104 to 59,387
_00315
AO356_00320: AO356_00320 - hypothetical protein, at 59,499 to 60,803
_00320
Position (kb) 58
59
60 Strain fitness (log2 ratio) -2
-1
0
1
2 at 57.142 kb on - strand, within AO356_00305 at 57.185 kb on + strand, within AO356_00305 at 57.185 kb on + strand, within AO356_00305 at 57.185 kb on + strand, within AO356_00305 at 57.185 kb on + strand, within AO356_00305 at 57.185 kb on + strand, within AO356_00305 at 57.186 kb on - strand, within AO356_00305 at 57.200 kb on + strand, within AO356_00305 at 57.200 kb on + strand, within AO356_00305 at 57.200 kb on + strand, within AO356_00305 at 57.200 kb on + strand, within AO356_00305 at 57.201 kb on - strand, within AO356_00305 at 57.203 kb on + strand, within AO356_00305 at 57.204 kb on - strand, within AO356_00305 at 57.234 kb on + strand at 57.234 kb on + strand at 57.234 kb on + strand at 57.234 kb on + strand at 57.235 kb on - strand at 57.235 kb on - strand at 57.241 kb on + strand at 57.242 kb on - strand at 57.267 kb on + strand at 57.317 kb on + strand at 57.317 kb on + strand at 57.317 kb on + strand at 57.317 kb on + strand at 57.317 kb on + strand at 57.318 kb on - strand at 57.318 kb on - strand at 57.318 kb on - strand at 57.318 kb on - strand at 57.320 kb on - strand at 57.320 kb on - strand at 57.329 kb on + strand at 57.329 kb on + strand at 57.329 kb on + strand at 57.329 kb on + strand at 57.338 kb on + strand at 57.338 kb on + strand at 57.338 kb on + strand at 57.339 kb on - strand at 57.339 kb on - strand at 57.339 kb on - strand at 57.339 kb on - strand at 57.347 kb on + strand at 57.348 kb on - strand at 57.394 kb on - strand at 57.394 kb on - strand at 57.434 kb on + strand at 57.434 kb on + strand at 57.434 kb on + strand at 57.434 kb on + strand at 57.434 kb on + strand at 57.434 kb on + strand at 57.434 kb on + strand at 57.435 kb on - strand at 57.436 kb on + strand at 57.436 kb on + strand at 57.436 kb on + strand at 57.436 kb on + strand at 57.436 kb on + strand at 57.437 kb on - strand at 57.437 kb on - strand at 57.437 kb on - strand at 57.437 kb on - strand at 57.437 kb on - strand at 57.437 kb on - strand at 57.437 kb on - strand at 57.437 kb on - strand at 57.438 kb on + strand at 57.438 kb on + strand at 57.438 kb on + strand at 57.438 kb on + strand at 57.438 kb on + strand at 57.439 kb on - strand at 57.439 kb on - strand at 57.439 kb on - strand at 57.439 kb on - strand at 57.439 kb on - strand at 57.439 kb on - strand at 57.439 kb on - strand at 57.439 kb on - strand at 57.439 kb on - strand at 57.439 kb on - strand at 57.439 kb on - strand at 57.439 kb on - strand at 57.439 kb on - strand at 57.454 kb on - strand at 57.483 kb on + strand at 57.484 kb on - strand at 57.484 kb on - strand at 57.484 kb on - strand at 57.488 kb on + strand at 57.488 kb on + strand at 57.488 kb on + strand at 57.488 kb on + strand at 57.488 kb on + strand at 57.489 kb on - strand at 57.489 kb on - strand at 57.489 kb on - strand at 57.490 kb on + strand at 57.490 kb on + strand at 57.533 kb on + strand at 57.534 kb on - strand at 57.546 kb on - strand at 57.572 kb on + strand, within AO356_00310 at 57.707 kb on + strand, within AO356_00310 at 57.708 kb on - strand, within AO356_00310 at 57.708 kb on - strand, within AO356_00310 at 57.716 kb on + strand, within AO356_00310 at 57.716 kb on + strand, within AO356_00310 at 57.716 kb on + strand, within AO356_00310 at 57.716 kb on + strand, within AO356_00310 at 57.717 kb on - strand, within AO356_00310 at 57.717 kb on - strand, within AO356_00310 at 57.717 kb on - strand, within AO356_00310 at 57.717 kb on - strand, within AO356_00310 at 57.719 kb on + strand, within AO356_00310 at 57.720 kb on - strand, within AO356_00310 at 57.720 kb on - strand, within AO356_00310 at 57.740 kb on + strand, within AO356_00310 at 57.740 kb on + strand, within AO356_00310 at 57.740 kb on + strand, within AO356_00310 at 57.741 kb on - strand, within AO356_00310 at 57.741 kb on - strand, within AO356_00310 at 57.846 kb on + strand, within AO356_00310 at 57.846 kb on + strand, within AO356_00310 at 58.015 kb on - strand, within AO356_00310 at 58.109 kb on + strand at 58.109 kb on + strand at 58.109 kb on + strand at 58.110 kb on - strand at 58.209 kb on + strand at 58.212 kb on + strand at 58.212 kb on + strand at 58.213 kb on - strand at 58.213 kb on - strand at 58.218 kb on - strand at 58.249 kb on + strand, within AO356_00315 at 58.250 kb on - strand, within AO356_00315 at 58.250 kb on - strand, within AO356_00315 at 58.250 kb on - strand, within AO356_00315 at 58.250 kb on - strand, within AO356_00315 at 58.257 kb on + strand, within AO356_00315 at 58.257 kb on + strand, within AO356_00315 at 58.326 kb on + strand, within AO356_00315 at 58.327 kb on - strand, within AO356_00315 at 58.381 kb on + strand, within AO356_00315 at 58.381 kb on + strand, within AO356_00315 at 58.381 kb on + strand, within AO356_00315 at 58.381 kb on + strand, within AO356_00315 at 58.382 kb on - strand, within AO356_00315 at 58.438 kb on + strand, within AO356_00315 at 58.438 kb on + strand, within AO356_00315 at 58.438 kb on + strand, within AO356_00315 at 58.438 kb on + strand, within AO356_00315 at 58.438 kb on + strand, within AO356_00315 at 58.461 kb on + strand, within AO356_00315 at 58.462 kb on - strand, within AO356_00315 at 58.462 kb on - strand, within AO356_00315 at 58.477 kb on + strand, within AO356_00315 at 58.506 kb on + strand, within AO356_00315 at 58.506 kb on + strand, within AO356_00315 at 58.506 kb on + strand, within AO356_00315 at 58.506 kb on + strand, within AO356_00315 at 58.506 kb on + strand, within AO356_00315 at 58.507 kb on - strand, within AO356_00315 at 58.507 kb on - strand, within AO356_00315 at 58.507 kb on - strand, within AO356_00315 at 58.507 kb on - strand, within AO356_00315 at 58.507 kb on - strand, within AO356_00315 at 58.507 kb on - strand, within AO356_00315 at 58.507 kb on - strand, within AO356_00315 at 58.507 kb on - strand, within AO356_00315 at 58.512 kb on + strand, within AO356_00315 at 58.693 kb on - strand, within AO356_00315 at 58.719 kb on + strand, within AO356_00315 at 58.773 kb on + strand, within AO356_00315 at 58.774 kb on - strand, within AO356_00315 at 58.847 kb on + strand, within AO356_00315 at 58.847 kb on + strand, within AO356_00315 at 58.886 kb on - strand, within AO356_00315 at 58.886 kb on - strand, within AO356_00315 at 58.931 kb on + strand, within AO356_00315 at 58.959 kb on + strand, within AO356_00315 at 58.959 kb on + strand, within AO356_00315 at 58.959 kb on + strand, within AO356_00315 at 58.960 kb on - strand, within AO356_00315 at 59.123 kb on + strand, within AO356_00315 at 59.123 kb on + strand, within AO356_00315 at 59.123 kb on + strand, within AO356_00315 at 59.123 kb on + strand, within AO356_00315 at 59.123 kb on + strand, within AO356_00315 at 59.123 kb on + strand, within AO356_00315 at 59.128 kb on - strand, within AO356_00315 at 59.192 kb on + strand, within AO356_00315 at 59.319 kb on + strand at 59.319 kb on + strand at 59.319 kb on + strand at 59.320 kb on - strand at 59.320 kb on - strand at 59.320 kb on - strand at 59.320 kb on - strand at 59.389 kb on + strand at 59.389 kb on + strand at 59.390 kb on - strand at 59.390 kb on - strand at 59.390 kb on - strand at 59.413 kb on - strand at 59.413 kb on - strand at 59.447 kb on - strand at 59.508 kb on + strand at 59.508 kb on + strand at 59.508 kb on + strand at 59.508 kb on + strand at 59.533 kb on + strand at 59.533 kb on + strand at 59.593 kb on - strand at 59.617 kb on + strand at 59.700 kb on + strand, within AO356_00320 at 59.700 kb on + strand, within AO356_00320 at 59.700 kb on + strand, within AO356_00320 at 59.700 kb on + strand, within AO356_00320 at 59.700 kb on + strand, within AO356_00320 at 59.700 kb on + strand, within AO356_00320 at 59.773 kb on - strand, within AO356_00320 at 59.801 kb on - strand, within AO356_00320 at 59.827 kb on - strand, within AO356_00320 at 59.904 kb on + strand, within AO356_00320 at 59.904 kb on + strand, within AO356_00320 at 59.934 kb on + strand, within AO356_00320 at 59.934 kb on + strand, within AO356_00320 at 59.934 kb on + strand, within AO356_00320 at 59.934 kb on + strand, within AO356_00320 at 59.934 kb on + strand, within AO356_00320 at 59.934 kb on + strand, within AO356_00320 at 59.935 kb on - strand, within AO356_00320 at 59.935 kb on - strand, within AO356_00320 at 59.935 kb on - strand, within AO356_00320 at 59.935 kb on - strand, within AO356_00320 at 59.935 kb on - strand, within AO356_00320 at 59.935 kb on - strand, within AO356_00320 at 59.945 kb on + strand, within AO356_00320 at 59.945 kb on + strand, within AO356_00320 at 59.946 kb on - strand, within AO356_00320 at 59.966 kb on - strand, within AO356_00320 at 59.966 kb on - strand, within AO356_00320 at 59.966 kb on - strand, within AO356_00320 at 59.966 kb on - strand, within AO356_00320 at 59.984 kb on + strand, within AO356_00320 at 60.117 kb on + strand, within AO356_00320 at 60.118 kb on - strand, within AO356_00320 at 60.184 kb on + strand, within AO356_00320 at 60.184 kb on + strand, within AO356_00320 at 60.185 kb on - strand, within AO356_00320 at 60.203 kb on - strand, within AO356_00320 at 60.279 kb on + strand, within AO356_00320 at 60.279 kb on + strand, within AO356_00320 at 60.280 kb on - strand, within AO356_00320 at 60.325 kb on - strand, within AO356_00320 at 60.325 kb on - strand, within AO356_00320
Per-strain Table
Position Strand Gene LocusTag Fraction Rifampicin 0.0024 mg/ml remove 57,142 - AO356_00305 0.78 +0.4 57,185 + AO356_00305 0.85 -0.6 57,185 + AO356_00305 0.85 +1.1 57,185 + AO356_00305 0.85 +0.2 57,185 + AO356_00305 0.85 +0.4 57,185 + AO356_00305 0.85 +0.8 57,186 - AO356_00305 0.85 +0.6 57,200 + AO356_00305 0.87 -0.1 57,200 + AO356_00305 0.87 -0.2 57,200 + AO356_00305 0.87 -0.4 57,200 + AO356_00305 0.87 +0.6 57,201 - AO356_00305 0.87 +0.3 57,203 + AO356_00305 0.88 -0.3 57,204 - AO356_00305 0.88 +0.1 57,234 + -0.8 57,234 + -0.1 57,234 + +0.7 57,234 + -0.1 57,235 - +0.1 57,235 - +0.4 57,241 + +0.6 57,242 - -0.4 57,267 + +0.4 57,317 + +0.9 57,317 + +1.6 57,317 + +0.9 57,317 + -0.7 57,317 + +1.2 57,318 - +0.2 57,318 - -0.3 57,318 - -0.4 57,318 - -0.6 57,320 - -0.3 57,320 - -0.8 57,329 + +0.5 57,329 + -1.2 57,329 + -0.4 57,329 + -0.1 57,338 + +0.2 57,338 + -0.3 57,338 + +0.7 57,339 - +0.2 57,339 - +0.2 57,339 - -0.2 57,339 - -0.3 57,347 + +0.6 57,348 - -0.2 57,394 - +0.9 57,394 - +0.6 57,434 + -0.0 57,434 + -0.3 57,434 + +0.8 57,434 + +0.7 57,434 + +0.7 57,434 + +0.0 57,434 + +0.6 57,435 - +0.2 57,436 + -0.1 57,436 + +0.2 57,436 + +1.6 57,436 + -0.2 57,436 + +0.2 57,437 - +1.6 57,437 - -0.7 57,437 - +0.9 57,437 - +0.3 57,437 - +1.1 57,437 - +1.0 57,437 - +0.1 57,437 - -0.2 57,438 + +0.3 57,438 + +0.7 57,438 + +0.9 57,438 + +0.2 57,438 + +0.1 57,439 - +0.1 57,439 - -0.3 57,439 - -0.3 57,439 - +0.7 57,439 - -0.5 57,439 - -1.0 57,439 - -2.4 57,439 - +1.7 57,439 - +0.1 57,439 - -0.6 57,439 - +1.1 57,439 - +0.3 57,439 - +0.4 57,454 - -0.3 57,483 + +0.0 57,484 - -0.2 57,484 - -0.1 57,484 - -0.8 57,488 + -0.6 57,488 + +0.1 57,488 + -0.3 57,488 + +0.3 57,488 + -0.3 57,489 - +0.3 57,489 - -1.5 57,489 - +0.4 57,490 + +0.8 57,490 + -0.8 57,533 + +0.3 57,534 - +0.4 57,546 - +1.8 57,572 + AO356_00310 0.13 +0.3 57,707 + AO356_00310 0.35 -0.4 57,708 - AO356_00310 0.35 -2.0 57,708 - AO356_00310 0.35 +0.7 57,716 + AO356_00310 0.36 -0.7 57,716 + AO356_00310 0.36 +0.1 57,716 + AO356_00310 0.36 -0.7 57,716 + AO356_00310 0.36 -1.0 57,717 - AO356_00310 0.36 -0.2 57,717 - AO356_00310 0.36 -0.0 57,717 - AO356_00310 0.36 +0.6 57,717 - AO356_00310 0.36 -0.9 57,719 + AO356_00310 0.37 -0.7 57,720 - AO356_00310 0.37 +0.1 57,720 - AO356_00310 0.37 -0.4 57,740 + AO356_00310 0.40 +0.1 57,740 + AO356_00310 0.40 +0.2 57,740 + AO356_00310 0.40 -0.1 57,741 - AO356_00310 0.40 +1.2 57,741 - AO356_00310 0.40 +0.8 57,846 + AO356_00310 0.57 -0.7 57,846 + AO356_00310 0.57 -1.0 58,015 - AO356_00310 0.84 -0.1 58,109 + +0.3 58,109 + +0.8 58,109 + +0.3 58,110 - +0.6 58,209 + +0.4 58,212 + -0.9 58,212 + -0.5 58,213 - -1.8 58,213 - -0.0 58,218 - +0.4 58,249 + AO356_00315 0.11 +0.1 58,250 - AO356_00315 0.11 +0.2 58,250 - AO356_00315 0.11 +0.5 58,250 - AO356_00315 0.11 -1.2 58,250 - AO356_00315 0.11 +0.8 58,257 + AO356_00315 0.12 +0.4 58,257 + AO356_00315 0.12 -0.9 58,326 + AO356_00315 0.17 +0.2 58,327 - AO356_00315 0.17 -1.5 58,381 + AO356_00315 0.22 -0.6 58,381 + AO356_00315 0.22 +0.8 58,381 + AO356_00315 0.22 +0.0 58,381 + AO356_00315 0.22 +0.5 58,382 - AO356_00315 0.22 +1.2 58,438 + AO356_00315 0.26 -0.2 58,438 + AO356_00315 0.26 -1.0 58,438 + AO356_00315 0.26 -1.1 58,438 + AO356_00315 0.26 -1.0 58,438 + AO356_00315 0.26 -0.5 58,461 + AO356_00315 0.28 -0.1 58,462 - AO356_00315 0.28 -1.2 58,462 - AO356_00315 0.28 -0.5 58,477 + AO356_00315 0.29 +0.3 58,506 + AO356_00315 0.31 +0.6 58,506 + AO356_00315 0.31 +0.5 58,506 + AO356_00315 0.31 +0.2 58,506 + AO356_00315 0.31 +1.1 58,506 + AO356_00315 0.31 -0.6 58,507 - AO356_00315 0.31 +0.2 58,507 - AO356_00315 0.31 -0.3 58,507 - AO356_00315 0.31 -0.2 58,507 - AO356_00315 0.31 +0.3 58,507 - AO356_00315 0.31 -0.0 58,507 - AO356_00315 0.31 -0.5 58,507 - AO356_00315 0.31 -0.3 58,507 - AO356_00315 0.31 -0.1 58,512 + AO356_00315 0.32 -0.3 58,693 - AO356_00315 0.46 +0.4 58,719 + AO356_00315 0.48 +0.5 58,773 + AO356_00315 0.52 -0.8 58,774 - AO356_00315 0.52 -0.1 58,847 + AO356_00315 0.58 +0.7 58,847 + AO356_00315 0.58 +0.8 58,886 - AO356_00315 0.61 -0.5 58,886 - AO356_00315 0.61 +0.8 58,931 + AO356_00315 0.64 +0.6 58,959 + AO356_00315 0.67 -0.9 58,959 + AO356_00315 0.67 +0.1 58,959 + AO356_00315 0.67 +0.1 58,960 - AO356_00315 0.67 +0.9 59,123 + AO356_00315 0.79 +0.0 59,123 + AO356_00315 0.79 -0.2 59,123 + AO356_00315 0.79 +0.2 59,123 + AO356_00315 0.79 -0.8 59,123 + AO356_00315 0.79 -0.0 59,123 + AO356_00315 0.79 +0.4 59,128 - AO356_00315 0.80 +0.7 59,192 + AO356_00315 0.85 -1.3 59,319 + +0.1 59,319 + +0.1 59,319 + -0.6 59,320 - -0.2 59,320 - +0.3 59,320 - +0.5 59,320 - +0.0 59,389 + +1.0 59,389 + +0.0 59,390 - -0.6 59,390 - -0.3 59,390 - -0.4 59,413 - +0.0 59,413 - +0.1 59,447 - -0.1 59,508 + +1.4 59,508 + -0.3 59,508 + +0.1 59,508 + +0.6 59,533 + -0.1 59,533 + +0.5 59,593 - -0.4 59,617 + -1.0 59,700 + AO356_00320 0.15 +1.2 59,700 + AO356_00320 0.15 +0.1 59,700 + AO356_00320 0.15 -0.9 59,700 + AO356_00320 0.15 +0.2 59,700 + AO356_00320 0.15 +0.3 59,700 + AO356_00320 0.15 +0.2 59,773 - AO356_00320 0.21 +0.6 59,801 - AO356_00320 0.23 +2.1 59,827 - AO356_00320 0.25 +1.0 59,904 + AO356_00320 0.31 -0.8 59,904 + AO356_00320 0.31 +0.2 59,934 + AO356_00320 0.33 -0.9 59,934 + AO356_00320 0.33 +0.6 59,934 + AO356_00320 0.33 +0.1 59,934 + AO356_00320 0.33 +2.4 59,934 + AO356_00320 0.33 +0.7 59,934 + AO356_00320 0.33 +0.5 59,935 - AO356_00320 0.33 +0.4 59,935 - AO356_00320 0.33 +0.3 59,935 - AO356_00320 0.33 -0.4 59,935 - AO356_00320 0.33 +0.7 59,935 - AO356_00320 0.33 +0.7 59,935 - AO356_00320 0.33 -0.1 59,945 + AO356_00320 0.34 -0.2 59,945 + AO356_00320 0.34 +0.7 59,946 - AO356_00320 0.34 +1.7 59,966 - AO356_00320 0.36 +1.0 59,966 - AO356_00320 0.36 -0.8 59,966 - AO356_00320 0.36 +0.2 59,966 - AO356_00320 0.36 +0.4 59,984 + AO356_00320 0.37 +1.3 60,117 + AO356_00320 0.47 -1.3 60,118 - AO356_00320 0.47 +1.3 60,184 + AO356_00320 0.52 +1.3 60,184 + AO356_00320 0.52 -0.4 60,185 - AO356_00320 0.53 -1.0 60,203 - AO356_00320 0.54 -0.8 60,279 + AO356_00320 0.60 +1.3 60,279 + AO356_00320 0.60 +0.5 60,280 - AO356_00320 0.60 +0.5 60,325 - AO356_00320 0.63 +0.3 60,325 - AO356_00320 0.63 -0.6
Or see this region's nucleotide sequence