Experiment: MoYLS4 with Ceftazidime 0.5 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DvMF_3029 and DvMF_3030 are separated by 136 nucleotides DvMF_3030 and DvMF_3031 are separated by 480 nucleotides DvMF_3031 and DvMF_3032 are separated by 267 nucleotides
DvMF_3029: DvMF_3029 - ABC transporter related (RefSeq), at 3,822,935 to 3,824,548
_3029
DvMF_3030: DvMF_3030 - regulatory protein, FmdB family (RefSeq), at 3,824,685 to 3,824,996
_3030
DvMF_3031: DvMF_3031 - intracellular protease, PfpI family (RefSeq), at 3,825,477 to 3,826,064
_3031
DvMF_3032: DvMF_3032 - dienelactone hydrolase (RefSeq), at 3,826,332 to 3,827,222
_3032
Position (kb)
3825
3826
3827 Strain fitness (log2 ratio)
-1
0
1 at 3825.038 kb on + strand at 3825.038 kb on + strand at 3825.046 kb on - strand at 3825.138 kb on - strand at 3825.268 kb on + strand at 3825.470 kb on - strand at 3825.473 kb on + strand at 3825.632 kb on - strand, within DvMF_3031 at 3825.673 kb on + strand, within DvMF_3031 at 3825.716 kb on + strand, within DvMF_3031 at 3825.761 kb on - strand, within DvMF_3031 at 3825.763 kb on + strand, within DvMF_3031 at 3825.878 kb on + strand, within DvMF_3031 at 3825.886 kb on - strand, within DvMF_3031 at 3826.018 kb on - strand at 3826.059 kb on + strand at 3826.486 kb on - strand, within DvMF_3032 at 3826.696 kb on - strand, within DvMF_3032 at 3826.767 kb on - strand, within DvMF_3032 at 3826.969 kb on + strand, within DvMF_3032 at 3826.969 kb on + strand, within DvMF_3032 at 3826.982 kb on - strand, within DvMF_3032
Per-strain Table
Position Strand Gene LocusTag Fraction MoYLS4 with Ceftazidime 0.5 mg/ml remove 3,825,038 + +0.2 3,825,038 + -0.3 3,825,046 - -0.5 3,825,138 - +0.6 3,825,268 + -0.2 3,825,470 - -0.5 3,825,473 + -0.0 3,825,632 - DvMF_3031 0.26 -1.1 3,825,673 + DvMF_3031 0.33 -0.9 3,825,716 + DvMF_3031 0.41 +0.8 3,825,761 - DvMF_3031 0.48 -0.8 3,825,763 + DvMF_3031 0.49 -0.7 3,825,878 + DvMF_3031 0.68 +0.6 3,825,886 - DvMF_3031 0.70 -0.8 3,826,018 - -1.3 3,826,059 + -0.3 3,826,486 - DvMF_3032 0.17 +0.4 3,826,696 - DvMF_3032 0.41 -0.7 3,826,767 - DvMF_3032 0.49 -0.3 3,826,969 + DvMF_3032 0.71 +0.7 3,826,969 + DvMF_3032 0.71 +0.4 3,826,982 - DvMF_3032 0.73 +0.1
Or see this region's nucleotide sequence