Strain Fitness in Desulfovibrio vulgaris Miyazaki F around DvMF_2889

Experiment: MoYLS4 with Ceftazidime 0.5 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDvMF_2888 and DvMF_2889 are separated by 356 nucleotidesDvMF_2889 and DvMF_2890 are separated by 117 nucleotidesDvMF_2890 and DvMF_2891 overlap by 11 nucleotides DvMF_2888: DvMF_2888 - signal recognition particle protein (RefSeq), at 3,643,457 to 3,645,013 _2888 DvMF_2889: DvMF_2889 - aspartate aminotransferase (RefSeq), at 3,645,370 to 3,646,554 _2889 DvMF_2890: DvMF_2890 - hypothetical protein (RefSeq), at 3,646,672 to 3,646,905 _2890 DvMF_2891: DvMF_2891 - 5-enolpyruvylshikimate-3-phosphate synthase-like protein (RefSeq), at 3,646,895 to 3,648,772 _2891 Position (kb) 3645 3646 3647Strain fitness (log2 ratio) -1 0 1at 3645.149 kb on + strandat 3645.187 kb on + strandat 3645.195 kb on - strandat 3645.196 kb on - strandat 3645.617 kb on - strand, within DvMF_2889at 3645.779 kb on + strand, within DvMF_2889at 3645.829 kb on + strand, within DvMF_2889at 3646.171 kb on + strand, within DvMF_2889at 3646.235 kb on + strand, within DvMF_2889at 3646.283 kb on + strand, within DvMF_2889at 3646.283 kb on + strand, within DvMF_2889at 3646.465 kb on - strandat 3646.979 kb on + strandat 3647.063 kb on - strandat 3647.106 kb on - strand, within DvMF_2891at 3647.242 kb on - strand, within DvMF_2891at 3647.442 kb on - strand, within DvMF_2891at 3647.545 kb on + strand, within DvMF_2891

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Per-strain Table

Position Strand Gene LocusTag Fraction MoYLS4 with Ceftazidime 0.5 mg/ml
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3,645,149 + +0.0
3,645,187 + -0.9
3,645,195 - -0.3
3,645,196 - -0.4
3,645,617 - DvMF_2889 0.21 -1.2
3,645,779 + DvMF_2889 0.35 -0.2
3,645,829 + DvMF_2889 0.39 -1.6
3,646,171 + DvMF_2889 0.68 -1.3
3,646,235 + DvMF_2889 0.73 +0.2
3,646,283 + DvMF_2889 0.77 -1.1
3,646,283 + DvMF_2889 0.77 -0.2
3,646,465 - -0.5
3,646,979 + -0.3
3,647,063 - -0.9
3,647,106 - DvMF_2891 0.11 -0.4
3,647,242 - DvMF_2891 0.18 +1.7
3,647,442 - DvMF_2891 0.29 -0.3
3,647,545 + DvMF_2891 0.35 -0.5

Or see this region's nucleotide sequence