Experiment: MoYLS4 with Ceftazidime 0.5 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DvMF_2885 and DvMF_2886 are separated by 196 nucleotides DvMF_2886 and rpsP are separated by 83 nucleotides rpsP and DvMF_2888 are separated by 88 nucleotides DvMF_2888 and DvMF_2889 are separated by 356 nucleotides
DvMF_2885: DvMF_2885 - 16S rRNA processing protein RimM (RefSeq), at 3,641,983 to 3,642,615
_2885
DvMF_2886: DvMF_2886 - hypothetical protein (RefSeq), at 3,642,812 to 3,643,045
_2886
DvMF_2887: rpsP - 30S ribosomal protein S16 (RefSeq), at 3,643,129 to 3,643,368
rpsP
DvMF_2888: DvMF_2888 - signal recognition particle protein (RefSeq), at 3,643,457 to 3,645,013
_2888
DvMF_2889: DvMF_2889 - aspartate aminotransferase (RefSeq), at 3,645,370 to 3,646,554
_2889
Position (kb)
3643
3644
3645
3646 Strain fitness (log2 ratio)
-1
0
1 at 3645.149 kb on + strand at 3645.187 kb on + strand at 3645.195 kb on - strand at 3645.196 kb on - strand at 3645.617 kb on - strand, within DvMF_2889 at 3645.779 kb on + strand, within DvMF_2889 at 3645.829 kb on + strand, within DvMF_2889
Per-strain Table
Position Strand Gene LocusTag Fraction MoYLS4 with Ceftazidime 0.5 mg/ml remove 3,645,149 + +0.0 3,645,187 + -0.9 3,645,195 - -0.3 3,645,196 - -0.4 3,645,617 - DvMF_2889 0.21 -1.2 3,645,779 + DvMF_2889 0.35 -0.2 3,645,829 + DvMF_2889 0.39 -1.6
Or see this region's nucleotide sequence