Experiment: MoYLS4 with Ceftazidime 0.5 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DvMF_2731 and DvMF_2732 overlap by 4 nucleotides DvMF_2732 and DvMF_2733 are separated by 18 nucleotides DvMF_2733 and DvMF_2734 are separated by 64 nucleotides DvMF_2734 and DvMF_2735 are separated by 130 nucleotides
DvMF_2731: DvMF_2731 - PAS/PAC sensor hybrid histidine kinase (RefSeq), at 3,455,132 to 3,458,155
_2731
DvMF_2732: DvMF_2732 - TadE family protein (RefSeq), at 3,458,152 to 3,458,640
_2732
DvMF_2733: DvMF_2733 - von Willebrand factor type A (RefSeq), at 3,458,659 to 3,459,879
_2733
DvMF_2734: DvMF_2734 - TadE family protein (RefSeq), at 3,459,944 to 3,460,381
_2734
DvMF_2735: DvMF_2735 - TPR repeat-containing protein (RefSeq), at 3,460,512 to 3,461,666
_2735
Position (kb)
3458
3459
3460 Strain fitness (log2 ratio)
-1
0
1 at 3457.672 kb on + strand, within DvMF_2731 at 3457.795 kb on + strand, within DvMF_2731 at 3458.126 kb on + strand at 3458.169 kb on + strand at 3458.382 kb on + strand, within DvMF_2732 at 3458.437 kb on + strand, within DvMF_2732 at 3458.473 kb on + strand, within DvMF_2732 at 3458.570 kb on - strand, within DvMF_2732 at 3458.848 kb on - strand, within DvMF_2733 at 3458.916 kb on + strand, within DvMF_2733 at 3458.960 kb on + strand, within DvMF_2733 at 3459.023 kb on + strand, within DvMF_2733 at 3459.358 kb on + strand, within DvMF_2733 at 3459.554 kb on + strand, within DvMF_2733 at 3459.578 kb on + strand, within DvMF_2733 at 3459.586 kb on - strand, within DvMF_2733 at 3459.645 kb on - strand, within DvMF_2733 at 3459.688 kb on - strand, within DvMF_2733 at 3459.709 kb on - strand, within DvMF_2733 at 3459.767 kb on - strand at 3459.838 kb on + strand at 3460.582 kb on - strand at 3460.639 kb on - strand, within DvMF_2735 at 3460.795 kb on - strand, within DvMF_2735 at 3460.820 kb on + strand, within DvMF_2735
Per-strain Table
Position Strand Gene LocusTag Fraction MoYLS4 with Ceftazidime 0.5 mg/ml remove 3,457,672 + DvMF_2731 0.84 -0.3 3,457,795 + DvMF_2731 0.88 -0.6 3,458,126 + +0.2 3,458,169 + +1.0 3,458,382 + DvMF_2732 0.47 +0.1 3,458,437 + DvMF_2732 0.58 -0.3 3,458,473 + DvMF_2732 0.66 -0.5 3,458,570 - DvMF_2732 0.85 -0.2 3,458,848 - DvMF_2733 0.15 +0.3 3,458,916 + DvMF_2733 0.21 -0.3 3,458,960 + DvMF_2733 0.25 +0.4 3,459,023 + DvMF_2733 0.30 +0.6 3,459,358 + DvMF_2733 0.57 -0.3 3,459,554 + DvMF_2733 0.73 -0.2 3,459,578 + DvMF_2733 0.75 -1.3 3,459,586 - DvMF_2733 0.76 +0.7 3,459,645 - DvMF_2733 0.81 -0.9 3,459,688 - DvMF_2733 0.84 -0.2 3,459,709 - DvMF_2733 0.86 -0.2 3,459,767 - -0.9 3,459,838 + -0.3 3,460,582 - -0.4 3,460,639 - DvMF_2735 0.11 -0.7 3,460,795 - DvMF_2735 0.25 -0.2 3,460,820 + DvMF_2735 0.27 -0.9
Or see this region's nucleotide sequence