Strain Fitness in Desulfovibrio vulgaris Miyazaki F around DvMF_2733

Experiment: MoYLS4 with Ceftazidime 0.5 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDvMF_2731 and DvMF_2732 overlap by 4 nucleotidesDvMF_2732 and DvMF_2733 are separated by 18 nucleotidesDvMF_2733 and DvMF_2734 are separated by 64 nucleotidesDvMF_2734 and DvMF_2735 are separated by 130 nucleotides DvMF_2731: DvMF_2731 - PAS/PAC sensor hybrid histidine kinase (RefSeq), at 3,455,132 to 3,458,155 _2731 DvMF_2732: DvMF_2732 - TadE family protein (RefSeq), at 3,458,152 to 3,458,640 _2732 DvMF_2733: DvMF_2733 - von Willebrand factor type A (RefSeq), at 3,458,659 to 3,459,879 _2733 DvMF_2734: DvMF_2734 - TadE family protein (RefSeq), at 3,459,944 to 3,460,381 _2734 DvMF_2735: DvMF_2735 - TPR repeat-containing protein (RefSeq), at 3,460,512 to 3,461,666 _2735 Position (kb) 3458 3459 3460Strain fitness (log2 ratio) -1 0 1at 3457.672 kb on + strand, within DvMF_2731at 3457.795 kb on + strand, within DvMF_2731at 3458.126 kb on + strandat 3458.169 kb on + strandat 3458.382 kb on + strand, within DvMF_2732at 3458.437 kb on + strand, within DvMF_2732at 3458.473 kb on + strand, within DvMF_2732at 3458.570 kb on - strand, within DvMF_2732at 3458.848 kb on - strand, within DvMF_2733at 3458.916 kb on + strand, within DvMF_2733at 3458.960 kb on + strand, within DvMF_2733at 3459.023 kb on + strand, within DvMF_2733at 3459.358 kb on + strand, within DvMF_2733at 3459.554 kb on + strand, within DvMF_2733at 3459.578 kb on + strand, within DvMF_2733at 3459.586 kb on - strand, within DvMF_2733at 3459.645 kb on - strand, within DvMF_2733at 3459.688 kb on - strand, within DvMF_2733at 3459.709 kb on - strand, within DvMF_2733at 3459.767 kb on - strandat 3459.838 kb on + strandat 3460.582 kb on - strandat 3460.639 kb on - strand, within DvMF_2735at 3460.795 kb on - strand, within DvMF_2735at 3460.820 kb on + strand, within DvMF_2735

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Per-strain Table

Position Strand Gene LocusTag Fraction MoYLS4 with Ceftazidime 0.5 mg/ml
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3,457,672 + DvMF_2731 0.84 -0.3
3,457,795 + DvMF_2731 0.88 -0.6
3,458,126 + +0.2
3,458,169 + +1.0
3,458,382 + DvMF_2732 0.47 +0.1
3,458,437 + DvMF_2732 0.58 -0.3
3,458,473 + DvMF_2732 0.66 -0.5
3,458,570 - DvMF_2732 0.85 -0.2
3,458,848 - DvMF_2733 0.15 +0.3
3,458,916 + DvMF_2733 0.21 -0.3
3,458,960 + DvMF_2733 0.25 +0.4
3,459,023 + DvMF_2733 0.30 +0.6
3,459,358 + DvMF_2733 0.57 -0.3
3,459,554 + DvMF_2733 0.73 -0.2
3,459,578 + DvMF_2733 0.75 -1.3
3,459,586 - DvMF_2733 0.76 +0.7
3,459,645 - DvMF_2733 0.81 -0.9
3,459,688 - DvMF_2733 0.84 -0.2
3,459,709 - DvMF_2733 0.86 -0.2
3,459,767 - -0.9
3,459,838 + -0.3
3,460,582 - -0.4
3,460,639 - DvMF_2735 0.11 -0.7
3,460,795 - DvMF_2735 0.25 -0.2
3,460,820 + DvMF_2735 0.27 -0.9

Or see this region's nucleotide sequence