Experiment: MoYLS4 with Ceftazidime 0.5 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DvMF_2181 and DvMF_2182 are separated by 340 nucleotides DvMF_2182 and DvMF_2183 are separated by 499 nucleotides
DvMF_2181: DvMF_2181 - heat shock protein Hsp20 (RefSeq), at 2,720,693 to 2,721,304
_2181
DvMF_2182: DvMF_2182 - methyl-accepting chemotaxis sensory transducer (RefSeq), at 2,721,645 to 2,723,423
_2182
DvMF_2183: DvMF_2183 - malate synthase G (RefSeq), at 2,723,923 to 2,726,118
_2183
Position (kb)
2721
2722
2723
2724 Strain fitness (log2 ratio)
-3
-2
-1
0
1 at 2720.883 kb on + strand, within DvMF_2181 at 2721.069 kb on - strand, within DvMF_2181 at 2721.138 kb on - strand, within DvMF_2181 at 2721.172 kb on - strand, within DvMF_2181 at 2721.373 kb on - strand at 2721.456 kb on + strand at 2721.530 kb on + strand at 2721.600 kb on - strand at 2721.620 kb on + strand at 2721.650 kb on - strand at 2721.731 kb on + strand at 2722.275 kb on + strand, within DvMF_2182 at 2722.282 kb on + strand, within DvMF_2182 at 2722.377 kb on + strand, within DvMF_2182 at 2722.477 kb on + strand, within DvMF_2182 at 2722.487 kb on + strand, within DvMF_2182 at 2722.547 kb on - strand, within DvMF_2182 at 2722.562 kb on - strand, within DvMF_2182 at 2722.562 kb on - strand, within DvMF_2182 at 2722.739 kb on + strand, within DvMF_2182 at 2722.829 kb on - strand, within DvMF_2182 at 2722.924 kb on + strand, within DvMF_2182 at 2722.932 kb on - strand, within DvMF_2182 at 2722.932 kb on - strand, within DvMF_2182 at 2722.996 kb on - strand, within DvMF_2182 at 2723.172 kb on + strand, within DvMF_2182 at 2723.246 kb on + strand at 2723.254 kb on - strand at 2723.256 kb on + strand at 2723.462 kb on - strand at 2723.580 kb on - strand at 2723.647 kb on - strand at 2723.698 kb on + strand at 2723.772 kb on - strand at 2723.914 kb on - strand at 2723.941 kb on - strand at 2724.016 kb on - strand at 2724.150 kb on + strand, within DvMF_2183 at 2724.213 kb on - strand, within DvMF_2183 at 2724.266 kb on - strand, within DvMF_2183 at 2724.414 kb on - strand, within DvMF_2183 at 2724.416 kb on - strand, within DvMF_2183
Per-strain Table
Position Strand Gene LocusTag Fraction MoYLS4 with Ceftazidime 0.5 mg/ml remove 2,720,883 + DvMF_2181 0.31 -0.3 2,721,069 - DvMF_2181 0.61 +0.3 2,721,138 - DvMF_2181 0.73 +0.0 2,721,172 - DvMF_2181 0.78 -0.5 2,721,373 - -0.4 2,721,456 + -0.3 2,721,530 + -0.4 2,721,600 - -0.6 2,721,620 + -0.4 2,721,650 - +0.1 2,721,731 + -0.1 2,722,275 + DvMF_2182 0.35 -0.0 2,722,282 + DvMF_2182 0.36 -0.8 2,722,377 + DvMF_2182 0.41 -3.3 2,722,477 + DvMF_2182 0.47 -0.5 2,722,487 + DvMF_2182 0.47 -1.1 2,722,547 - DvMF_2182 0.51 -0.4 2,722,562 - DvMF_2182 0.52 -0.7 2,722,562 - DvMF_2182 0.52 -1.2 2,722,739 + DvMF_2182 0.61 -1.6 2,722,829 - DvMF_2182 0.67 -1.1 2,722,924 + DvMF_2182 0.72 -0.5 2,722,932 - DvMF_2182 0.72 -1.0 2,722,932 - DvMF_2182 0.72 -1.1 2,722,996 - DvMF_2182 0.76 -0.7 2,723,172 + DvMF_2182 0.86 -0.4 2,723,246 + -0.6 2,723,254 - -0.7 2,723,256 + -0.3 2,723,462 - -0.3 2,723,580 - -0.2 2,723,647 - +0.6 2,723,698 + -0.7 2,723,772 - -0.8 2,723,914 - +0.4 2,723,941 - -0.3 2,724,016 - -0.6 2,724,150 + DvMF_2183 0.10 -0.7 2,724,213 - DvMF_2183 0.13 -1.7 2,724,266 - DvMF_2183 0.16 -0.1 2,724,414 - DvMF_2183 0.22 -0.3 2,724,416 - DvMF_2183 0.22 -0.9
Or see this region's nucleotide sequence