Strain Fitness in Desulfovibrio vulgaris Miyazaki F around DvMF_2182

Experiment: MoYLS4 with Ceftazidime 0.5 mg/ml

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntDvMF_2181 and DvMF_2182 are separated by 340 nucleotidesDvMF_2182 and DvMF_2183 are separated by 499 nucleotides DvMF_2181: DvMF_2181 - heat shock protein Hsp20 (RefSeq), at 2,720,693 to 2,721,304 _2181 DvMF_2182: DvMF_2182 - methyl-accepting chemotaxis sensory transducer (RefSeq), at 2,721,645 to 2,723,423 _2182 DvMF_2183: DvMF_2183 - malate synthase G (RefSeq), at 2,723,923 to 2,726,118 _2183 Position (kb) 2721 2722 2723 2724Strain fitness (log2 ratio) -3 -2 -1 0 1at 2720.883 kb on + strand, within DvMF_2181at 2721.069 kb on - strand, within DvMF_2181at 2721.138 kb on - strand, within DvMF_2181at 2721.172 kb on - strand, within DvMF_2181at 2721.373 kb on - strandat 2721.456 kb on + strandat 2721.530 kb on + strandat 2721.600 kb on - strandat 2721.620 kb on + strandat 2721.650 kb on - strandat 2721.731 kb on + strandat 2722.275 kb on + strand, within DvMF_2182at 2722.282 kb on + strand, within DvMF_2182at 2722.377 kb on + strand, within DvMF_2182at 2722.477 kb on + strand, within DvMF_2182at 2722.487 kb on + strand, within DvMF_2182at 2722.547 kb on - strand, within DvMF_2182at 2722.562 kb on - strand, within DvMF_2182at 2722.562 kb on - strand, within DvMF_2182at 2722.739 kb on + strand, within DvMF_2182at 2722.829 kb on - strand, within DvMF_2182at 2722.924 kb on + strand, within DvMF_2182at 2722.932 kb on - strand, within DvMF_2182at 2722.932 kb on - strand, within DvMF_2182at 2722.996 kb on - strand, within DvMF_2182at 2723.172 kb on + strand, within DvMF_2182at 2723.246 kb on + strandat 2723.254 kb on - strandat 2723.256 kb on + strandat 2723.462 kb on - strandat 2723.580 kb on - strandat 2723.647 kb on - strandat 2723.698 kb on + strandat 2723.772 kb on - strandat 2723.914 kb on - strandat 2723.941 kb on - strandat 2724.016 kb on - strandat 2724.150 kb on + strand, within DvMF_2183at 2724.213 kb on - strand, within DvMF_2183at 2724.266 kb on - strand, within DvMF_2183at 2724.414 kb on - strand, within DvMF_2183at 2724.416 kb on - strand, within DvMF_2183

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction MoYLS4 with Ceftazidime 0.5 mg/ml
remove
2,720,883 + DvMF_2181 0.31 -0.3
2,721,069 - DvMF_2181 0.61 +0.3
2,721,138 - DvMF_2181 0.73 +0.0
2,721,172 - DvMF_2181 0.78 -0.5
2,721,373 - -0.4
2,721,456 + -0.3
2,721,530 + -0.4
2,721,600 - -0.6
2,721,620 + -0.4
2,721,650 - +0.1
2,721,731 + -0.1
2,722,275 + DvMF_2182 0.35 -0.0
2,722,282 + DvMF_2182 0.36 -0.8
2,722,377 + DvMF_2182 0.41 -3.3
2,722,477 + DvMF_2182 0.47 -0.5
2,722,487 + DvMF_2182 0.47 -1.1
2,722,547 - DvMF_2182 0.51 -0.4
2,722,562 - DvMF_2182 0.52 -0.7
2,722,562 - DvMF_2182 0.52 -1.2
2,722,739 + DvMF_2182 0.61 -1.6
2,722,829 - DvMF_2182 0.67 -1.1
2,722,924 + DvMF_2182 0.72 -0.5
2,722,932 - DvMF_2182 0.72 -1.0
2,722,932 - DvMF_2182 0.72 -1.1
2,722,996 - DvMF_2182 0.76 -0.7
2,723,172 + DvMF_2182 0.86 -0.4
2,723,246 + -0.6
2,723,254 - -0.7
2,723,256 + -0.3
2,723,462 - -0.3
2,723,580 - -0.2
2,723,647 - +0.6
2,723,698 + -0.7
2,723,772 - -0.8
2,723,914 - +0.4
2,723,941 - -0.3
2,724,016 - -0.6
2,724,150 + DvMF_2183 0.10 -0.7
2,724,213 - DvMF_2183 0.13 -1.7
2,724,266 - DvMF_2183 0.16 -0.1
2,724,414 - DvMF_2183 0.22 -0.3
2,724,416 - DvMF_2183 0.22 -0.9

Or see this region's nucleotide sequence