Strain Fitness in Desulfovibrio vulgaris Miyazaki F around DvMF_1624

Experiment: MoYLS4 with Ceftazidime 0.5 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDvMF_1623 and DvMF_1624 are separated by 286 nucleotidesDvMF_1624 and DvMF_1625 overlap by 20 nucleotides DvMF_1623: DvMF_1623 - RNA polymerase, sigma-24 subunit, ECF subfamily (RefSeq), at 2,001,338 to 2,001,949 _1623 DvMF_1624: DvMF_1624 - two component transcriptional regulator, winged helix family (RefSeq), at 2,002,236 to 2,003,072 _1624 DvMF_1625: DvMF_1625 - integral membrane sensor signal transduction histidine kinase (RefSeq), at 2,003,053 to 2,004,765 _1625 Position (kb) 2002 2003 2004Strain fitness (log2 ratio) -2 -1 0 1at 2001.369 kb on + strandat 2001.396 kb on + strandat 2001.447 kb on + strand, within DvMF_1623at 2001.678 kb on - strand, within DvMF_1623at 2001.694 kb on + strand, within DvMF_1623at 2001.701 kb on + strand, within DvMF_1623at 2001.747 kb on - strand, within DvMF_1623at 2001.788 kb on - strand, within DvMF_1623at 2002.422 kb on - strand, within DvMF_1624at 2002.467 kb on - strand, within DvMF_1624at 2002.675 kb on + strand, within DvMF_1624at 2002.751 kb on - strand, within DvMF_1624at 2002.769 kb on - strand, within DvMF_1624at 2002.854 kb on + strand, within DvMF_1624at 2002.860 kb on - strand, within DvMF_1624at 2002.860 kb on - strand, within DvMF_1624at 2003.068 kb on + strandat 2003.344 kb on - strand, within DvMF_1625at 2003.725 kb on - strand, within DvMF_1625at 2003.735 kb on - strand, within DvMF_1625at 2003.746 kb on - strand, within DvMF_1625at 2003.812 kb on + strand, within DvMF_1625at 2003.820 kb on - strand, within DvMF_1625at 2003.846 kb on - strand, within DvMF_1625at 2003.884 kb on - strand, within DvMF_1625at 2003.966 kb on - strand, within DvMF_1625at 2003.989 kb on - strand, within DvMF_1625

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Per-strain Table

Position Strand Gene LocusTag Fraction MoYLS4 with Ceftazidime 0.5 mg/ml
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2,001,369 + +0.6
2,001,396 + +1.3
2,001,447 + DvMF_1623 0.18 -0.5
2,001,678 - DvMF_1623 0.56 +0.0
2,001,694 + DvMF_1623 0.58 -0.6
2,001,701 + DvMF_1623 0.59 -2.3
2,001,747 - DvMF_1623 0.67 -0.1
2,001,788 - DvMF_1623 0.74 +0.4
2,002,422 - DvMF_1624 0.22 -0.7
2,002,467 - DvMF_1624 0.28 -1.3
2,002,675 + DvMF_1624 0.52 -0.6
2,002,751 - DvMF_1624 0.62 -0.3
2,002,769 - DvMF_1624 0.64 -0.5
2,002,854 + DvMF_1624 0.74 -0.4
2,002,860 - DvMF_1624 0.75 -0.6
2,002,860 - DvMF_1624 0.75 -0.5
2,003,068 + +0.4
2,003,344 - DvMF_1625 0.17 -0.2
2,003,725 - DvMF_1625 0.39 -0.4
2,003,735 - DvMF_1625 0.40 -0.2
2,003,746 - DvMF_1625 0.40 +0.0
2,003,812 + DvMF_1625 0.44 -0.5
2,003,820 - DvMF_1625 0.45 -1.0
2,003,846 - DvMF_1625 0.46 -0.7
2,003,884 - DvMF_1625 0.49 +0.1
2,003,966 - DvMF_1625 0.53 -1.0
2,003,989 - DvMF_1625 0.55 -0.3

Or see this region's nucleotide sequence