Strain Fitness in Desulfovibrio vulgaris Miyazaki F around DvMF_1618

Experiment: MoYLS4 with Ceftazidime 0.5 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDvMF_1616 and DvMF_1617 overlap by 26 nucleotidesDvMF_1617 and DvMF_1618 are separated by 33 nucleotidesDvMF_1618 and DvMF_1619 are separated by 217 nucleotides DvMF_1616: DvMF_1616 - hypothetical protein (RefSeq), at 1,991,555 to 1,991,902 _1616 DvMF_1617: DvMF_1617 - flagellar hook capping protein (RefSeq), at 1,991,877 to 1,992,545 _1617 DvMF_1618: DvMF_1618 - protein of unknown function DUF1078 domain protein (RefSeq), at 1,992,579 to 1,994,156 _1618 DvMF_1619: DvMF_1619 - flagellar hook-associated protein FlgK (RefSeq), at 1,994,374 to 1,996,446 _1619 Position (kb) 1992 1993 1994 1995Strain fitness (log2 ratio) -2 -1 0 1at 1992.065 kb on - strand, within DvMF_1617at 1992.125 kb on - strand, within DvMF_1617at 1992.166 kb on - strand, within DvMF_1617at 1992.206 kb on + strand, within DvMF_1617at 1992.218 kb on + strand, within DvMF_1617at 1992.229 kb on + strand, within DvMF_1617at 1992.302 kb on - strand, within DvMF_1617at 1992.618 kb on + strandat 1992.620 kb on + strandat 1992.636 kb on - strandat 1992.668 kb on + strandat 1992.689 kb on + strandat 1992.712 kb on - strandat 1992.828 kb on - strand, within DvMF_1618at 1992.941 kb on + strand, within DvMF_1618at 1992.974 kb on - strand, within DvMF_1618at 1993.083 kb on - strand, within DvMF_1618at 1993.140 kb on + strand, within DvMF_1618at 1993.574 kb on + strand, within DvMF_1618at 1993.687 kb on - strand, within DvMF_1618at 1993.693 kb on + strand, within DvMF_1618at 1993.774 kb on + strand, within DvMF_1618at 1993.829 kb on + strand, within DvMF_1618at 1994.102 kb on + strandat 1994.103 kb on + strandat 1994.212 kb on + strandat 1994.450 kb on + strandat 1994.450 kb on + strandat 1994.649 kb on - strand, within DvMF_1619at 1994.788 kb on - strand, within DvMF_1619at 1994.938 kb on - strand, within DvMF_1619

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Per-strain Table

Position Strand Gene LocusTag Fraction MoYLS4 with Ceftazidime 0.5 mg/ml
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1,992,065 - DvMF_1617 0.28 -0.6
1,992,125 - DvMF_1617 0.37 -0.5
1,992,166 - DvMF_1617 0.43 -0.2
1,992,206 + DvMF_1617 0.49 -0.5
1,992,218 + DvMF_1617 0.51 -0.6
1,992,229 + DvMF_1617 0.53 -0.2
1,992,302 - DvMF_1617 0.64 +1.6
1,992,618 + +0.7
1,992,620 + -0.2
1,992,636 - -0.3
1,992,668 + -0.6
1,992,689 + -1.8
1,992,712 - -0.3
1,992,828 - DvMF_1618 0.16 -0.5
1,992,941 + DvMF_1618 0.23 +0.3
1,992,974 - DvMF_1618 0.25 +0.7
1,993,083 - DvMF_1618 0.32 -0.2
1,993,140 + DvMF_1618 0.36 +0.0
1,993,574 + DvMF_1618 0.63 -0.3
1,993,687 - DvMF_1618 0.70 -0.3
1,993,693 + DvMF_1618 0.71 -0.3
1,993,774 + DvMF_1618 0.76 -0.1
1,993,829 + DvMF_1618 0.79 -0.4
1,994,102 + +0.0
1,994,103 + -1.1
1,994,212 + +0.3
1,994,450 + -0.7
1,994,450 + -0.4
1,994,649 - DvMF_1619 0.13 +0.0
1,994,788 - DvMF_1619 0.20 +0.4
1,994,938 - DvMF_1619 0.27 -0.2

Or see this region's nucleotide sequence