Strain Fitness in Desulfovibrio vulgaris Miyazaki F around DvMF_0840

Experiment: MoYLS4 with Ceftazidime 0.5 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDvMF_0839 and DvMF_0840 are separated by 195 nucleotidesDvMF_0840 and DvMF_0841 are separated by 75 nucleotides DvMF_0839: DvMF_0839 - Asparaginase (RefSeq), at 1,013,287 to 1,014,276 _0839 DvMF_0840: DvMF_0840 - glycogen branching enzyme (RefSeq), at 1,014,472 to 1,016,403 _0840 DvMF_0841: DvMF_0841 - glycogen/starch synthase, ADP-glucose type (RefSeq), at 1,016,479 to 1,017,945 _0841 Position (kb) 1014 1015 1016 1017Strain fitness (log2 ratio) -3 -2 -1 0 1at 1014.018 kb on + strand, within DvMF_0839at 1014.065 kb on + strand, within DvMF_0839at 1014.080 kb on - strand, within DvMF_0839at 1014.133 kb on - strand, within DvMF_0839at 1014.698 kb on - strand, within DvMF_0840at 1014.893 kb on + strand, within DvMF_0840at 1014.893 kb on + strand, within DvMF_0840at 1015.237 kb on + strand, within DvMF_0840at 1015.502 kb on - strand, within DvMF_0840at 1015.509 kb on + strand, within DvMF_0840at 1015.530 kb on + strand, within DvMF_0840at 1015.733 kb on + strand, within DvMF_0840at 1015.765 kb on - strand, within DvMF_0840at 1015.833 kb on + strand, within DvMF_0840at 1016.069 kb on - strand, within DvMF_0840at 1016.296 kb on - strandat 1016.338 kb on + strandat 1016.463 kb on - strandat 1016.670 kb on - strand, within DvMF_0841at 1016.942 kb on - strand, within DvMF_0841at 1016.951 kb on - strand, within DvMF_0841at 1017.117 kb on - strand, within DvMF_0841at 1017.397 kb on + strand, within DvMF_0841

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Per-strain Table

Position Strand Gene LocusTag Fraction MoYLS4 with Ceftazidime 0.5 mg/ml
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1,014,018 + DvMF_0839 0.74 +1.3
1,014,065 + DvMF_0839 0.79 -0.5
1,014,080 - DvMF_0839 0.80 -0.6
1,014,133 - DvMF_0839 0.85 -0.9
1,014,698 - DvMF_0840 0.12 -1.0
1,014,893 + DvMF_0840 0.22 -0.8
1,014,893 + DvMF_0840 0.22 -1.0
1,015,237 + DvMF_0840 0.40 -1.6
1,015,502 - DvMF_0840 0.53 -1.3
1,015,509 + DvMF_0840 0.54 -1.6
1,015,530 + DvMF_0840 0.55 -0.1
1,015,733 + DvMF_0840 0.65 -2.8
1,015,765 - DvMF_0840 0.67 -0.9
1,015,833 + DvMF_0840 0.70 -0.1
1,016,069 - DvMF_0840 0.83 -1.6
1,016,296 - -1.8
1,016,338 + -0.4
1,016,463 - -0.3
1,016,670 - DvMF_0841 0.13 -0.6
1,016,942 - DvMF_0841 0.32 -0.7
1,016,951 - DvMF_0841 0.32 -1.2
1,017,117 - DvMF_0841 0.43 -0.8
1,017,397 + DvMF_0841 0.63 -0.5

Or see this region's nucleotide sequence