Strain Fitness in Shewanella loihica PV-4 around Shew_2348

Experiment: Choline Lysine 10 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntShew_2347 and Shew_2348 are separated by 239 nucleotidesShew_2348 and Shew_2349 overlap by 10 nucleotides Shew_2347: Shew_2347 - phosphonate ABC transporter, periplasmic phosphonate-binding protein (RefSeq), at 2,741,403 to 2,742,257 _2347 Shew_2348: Shew_2348 - two component transcriptional regulator (RefSeq), at 2,742,497 to 2,743,171 _2348 Shew_2349: Shew_2349 - integral membrane sensor signal transduction histidine kinase (RefSeq), at 2,743,162 to 2,744,511 _2349 Position (kb) 2742 2743 2744Strain fitness (log2 ratio) -1 0 1at 2741.634 kb on - strand, within Shew_2347at 2741.640 kb on + strand, within Shew_2347at 2742.078 kb on - strand, within Shew_2347at 2742.252 kb on + strandat 2742.394 kb on - strandat 2742.549 kb on - strandat 2743.389 kb on + strand, within Shew_2349at 2743.397 kb on - strand, within Shew_2349at 2743.487 kb on - strand, within Shew_2349at 2743.866 kb on - strand, within Shew_2349at 2744.124 kb on + strand, within Shew_2349

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Per-strain Table

Position Strand Gene LocusTag Fraction Choline Lysine 10 mM
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2,741,634 - Shew_2347 0.27 -0.1
2,741,640 + Shew_2347 0.28 +0.2
2,742,078 - Shew_2347 0.79 +1.2
2,742,252 + +0.3
2,742,394 - -0.1
2,742,549 - -0.5
2,743,389 + Shew_2349 0.17 +0.1
2,743,397 - Shew_2349 0.17 +0.0
2,743,487 - Shew_2349 0.24 +0.3
2,743,866 - Shew_2349 0.52 +0.1
2,744,124 + Shew_2349 0.71 +1.3

Or see this region's nucleotide sequence