Experiment: Choline Lysine 10 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shew_0033 and Shew_0034 are separated by 61 nucleotides Shew_0034 and Shew_0035 are separated by 203 nucleotides
Shew_0033: Shew_0033 - peptidase M14, carboxypeptidase A (RefSeq), at 37,798 to 39,639
_0033
Shew_0034: Shew_0034 - methyltransferase type 12 (RefSeq), at 39,701 to 40,504
_0034
Shew_0035: Shew_0035 - putative lipoprotein (RefSeq), at 40,708 to 41,478
_0035
Position (kb) 39
40
41 Strain fitness (log2 ratio) -2
-1
0
1 at 38.869 kb on + strand, within Shew_0033 at 38.881 kb on + strand, within Shew_0033 at 38.998 kb on + strand, within Shew_0033 at 39.076 kb on + strand, within Shew_0033 at 39.084 kb on - strand, within Shew_0033 at 39.100 kb on - strand, within Shew_0033 at 39.145 kb on - strand, within Shew_0033 at 39.195 kb on + strand, within Shew_0033 at 39.195 kb on + strand, within Shew_0033 at 39.195 kb on + strand, within Shew_0033 at 39.203 kb on - strand, within Shew_0033 at 39.211 kb on - strand, within Shew_0033 at 39.211 kb on - strand, within Shew_0033 at 39.609 kb on + strand at 39.628 kb on - strand at 40.137 kb on + strand, within Shew_0034 at 40.145 kb on - strand, within Shew_0034 at 40.320 kb on + strand, within Shew_0034 at 40.699 kb on - strand at 40.779 kb on - strand at 40.904 kb on - strand, within Shew_0035 at 40.906 kb on + strand, within Shew_0035 at 40.976 kb on - strand, within Shew_0035 at 41.186 kb on + strand, within Shew_0035 at 41.253 kb on + strand, within Shew_0035 at 41.334 kb on + strand, within Shew_0035 at 41.334 kb on + strand, within Shew_0035 at 41.334 kb on + strand, within Shew_0035 at 41.335 kb on - strand, within Shew_0035 at 41.344 kb on + strand, within Shew_0035 at 41.349 kb on + strand, within Shew_0035 at 41.407 kb on - strand at 41.479 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Choline Lysine 10 mM remove 38,869 + Shew_0033 0.58 -2.3 38,881 + Shew_0033 0.59 -0.3 38,998 + Shew_0033 0.65 -0.0 39,076 + Shew_0033 0.69 -1.3 39,084 - Shew_0033 0.70 -0.2 39,100 - Shew_0033 0.71 -0.4 39,145 - Shew_0033 0.73 -0.0 39,195 + Shew_0033 0.76 +0.1 39,195 + Shew_0033 0.76 +0.1 39,195 + Shew_0033 0.76 -0.4 39,203 - Shew_0033 0.76 +0.3 39,211 - Shew_0033 0.77 -0.2 39,211 - Shew_0033 0.77 -0.2 39,609 + -0.5 39,628 - +0.1 40,137 + Shew_0034 0.54 +0.3 40,145 - Shew_0034 0.55 -0.0 40,320 + Shew_0034 0.77 -0.0 40,699 - +0.0 40,779 - -0.0 40,904 - Shew_0035 0.25 -0.2 40,906 + Shew_0035 0.26 -0.2 40,976 - Shew_0035 0.35 -0.1 41,186 + Shew_0035 0.62 -0.4 41,253 + Shew_0035 0.71 -0.1 41,334 + Shew_0035 0.81 -0.2 41,334 + Shew_0035 0.81 -0.1 41,334 + Shew_0035 0.81 -0.1 41,335 - Shew_0035 0.81 +0.1 41,344 + Shew_0035 0.82 +0.1 41,349 + Shew_0035 0.83 -0.0 41,407 - +0.6 41,479 + -0.2
Or see this region's nucleotide sequence