Experiment: m.b. Paraquat dichloride 0.015 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dshi_3807 and Dshi_3808 are separated by 4 nucleotides Dshi_3808 and Dshi_3809 overlap by 4 nucleotides Dshi_3809 and Dshi_3810 are separated by 7 nucleotides Dshi_3810 and Dshi_3811 are separated by 42 nucleotides
Dshi_3807: Dshi_3807 - NADH dehydrogenase (quinone) (RefSeq), at 16,179 to 17,699
_3807
Dshi_3808: Dshi_3808 - cation antiporter (RefSeq), at 17,704 to 18,195
_3808
Dshi_3809: Dshi_3809 - multiple resistance and pH regulation protein F (RefSeq), at 18,192 to 18,461
_3809
Dshi_3810: Dshi_3810 - monovalent cation/proton antiporter, MnhG/PhaG subunit (RefSeq), at 18,469 to 18,858
_3810
Dshi_3811: Dshi_3811 - fumarylacetoacetase (RefSeq), at 18,901 to 20,142
_3811
Position (kb) 18
19 Strain fitness (log2 ratio) -2
-1
0
1 at 17.671 kb on - strand at 17.785 kb on - strand, within Dshi_3808 at 17.820 kb on + strand, within Dshi_3808 at 18.738 kb on + strand, within Dshi_3810 at 18.738 kb on + strand, within Dshi_3810 at 18.783 kb on - strand, within Dshi_3810 at 18.783 kb on - strand, within Dshi_3810 at 18.805 kb on + strand, within Dshi_3810 at 18.985 kb on - strand at 19.167 kb on - strand, within Dshi_3811 at 19.371 kb on + strand, within Dshi_3811 at 19.435 kb on + strand, within Dshi_3811 at 19.454 kb on + strand at 19.717 kb on + strand, within Dshi_3811 at 19.772 kb on + strand, within Dshi_3811 at 19.806 kb on - strand, within Dshi_3811 at 19.806 kb on - strand, within Dshi_3811
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Paraquat dichloride 0.015 mg/ml remove 17,671 - -1.8 17,785 - Dshi_3808 0.16 -1.4 17,820 + Dshi_3808 0.24 -1.4 18,738 + Dshi_3810 0.69 +0.2 18,738 + Dshi_3810 0.69 -0.9 18,783 - Dshi_3810 0.81 +0.4 18,783 - Dshi_3810 0.81 +0.4 18,805 + Dshi_3810 0.86 +1.6 18,985 - -0.2 19,167 - Dshi_3811 0.21 -0.2 19,371 + Dshi_3811 0.38 -0.4 19,435 + Dshi_3811 0.43 +0.5 19,454 + -0.4 19,717 + Dshi_3811 0.66 -0.9 19,772 + Dshi_3811 0.70 +0.8 19,806 - Dshi_3811 0.73 +1.7 19,806 - Dshi_3811 0.73 -1.2
Or see this region's nucleotide sequence