Strain Fitness in Dinoroseobacter shibae DFL-12 around Dshi_2866

Experiment: m.b. Paraquat dichloride 0.015 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDshi_2865 and Dshi_2866 are separated by 16 nucleotidesDshi_2866 and Dshi_2867 are separated by 11 nucleotidesDshi_2867 and Dshi_2868 are separated by 299 nucleotides Dshi_2865: Dshi_2865 - succinate dehydrogenase, flavoprotein subunit (RefSeq), at 3,021,696 to 3,023,498 _2865 Dshi_2866: Dshi_2866 - Succinate dehydrogenase hydrophobic membrane anchor (RefSeq), at 3,023,515 to 3,023,886 _2866 Dshi_2867: Dshi_2867 - Succinate dehydrogenase cytochrome b556 subunit (RefSeq), at 3,023,898 to 3,024,281 _2867 Dshi_2868: Dshi_2868 - cytochrome c class II (RefSeq), at 3,024,581 to 3,025,060 _2868 Position (kb) 3023 3024Strain fitness (log2 ratio) -1 0 1at 3024.467 kb on - strandat 3024.608 kb on + strandat 3024.659 kb on + strand, within Dshi_2868at 3024.659 kb on + strand, within Dshi_2868at 3024.729 kb on - strand, within Dshi_2868at 3024.745 kb on + strand, within Dshi_2868

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Paraquat dichloride 0.015 mg/ml
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3,024,467 - -0.6
3,024,608 + +0.4
3,024,659 + Dshi_2868 0.16 +1.1
3,024,659 + Dshi_2868 0.16 -0.4
3,024,729 - Dshi_2868 0.31 -0.4
3,024,745 + Dshi_2868 0.34 -0.1

Or see this region's nucleotide sequence