Experiment: m.b. Paraquat dichloride 0.015 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dshi_1825 and Dshi_1826 are separated by 52 nucleotides Dshi_1826 and Dshi_1827 are separated by 16 nucleotides Dshi_1827 and Dshi_1828 are separated by 138 nucleotides
Dshi_1825: Dshi_1825 - phosphate acetyltransferase (RefSeq), at 1,904,769 to 1,905,794
_1825
Dshi_1826: Dshi_1826 - protein of unknown function DUF861 cupin_3 (RefSeq), at 1,905,847 to 1,906,206
_1826
Dshi_1827: Dshi_1827 - hypothetical protein (RefSeq), at 1,906,223 to 1,907,263
_1827
Dshi_1828: Dshi_1828 - thiamine pyrophosphate protein central region (RefSeq), at 1,907,402 to 1,909,183
_1828
Position (kb)
1906
1907
1908 Strain fitness (log2 ratio)
-1
0
1
2 at 1905.239 kb on - strand, within Dshi_1825 at 1905.466 kb on + strand, within Dshi_1825 at 1905.474 kb on - strand, within Dshi_1825 at 1905.541 kb on - strand, within Dshi_1825 at 1905.541 kb on - strand, within Dshi_1825 at 1905.572 kb on - strand, within Dshi_1825 at 1905.692 kb on + strand at 1905.796 kb on + strand at 1905.899 kb on - strand, within Dshi_1826 at 1905.974 kb on + strand, within Dshi_1826 at 1906.101 kb on - strand, within Dshi_1826 at 1906.265 kb on + strand at 1906.274 kb on + strand at 1906.398 kb on + strand, within Dshi_1827 at 1906.398 kb on + strand, within Dshi_1827 at 1906.498 kb on + strand, within Dshi_1827 at 1906.552 kb on - strand, within Dshi_1827 at 1906.574 kb on + strand, within Dshi_1827 at 1906.583 kb on + strand, within Dshi_1827 at 1906.583 kb on + strand, within Dshi_1827 at 1906.633 kb on - strand, within Dshi_1827 at 1906.647 kb on - strand, within Dshi_1827 at 1906.862 kb on + strand, within Dshi_1827 at 1906.878 kb on + strand, within Dshi_1827 at 1906.912 kb on - strand, within Dshi_1827 at 1906.945 kb on + strand, within Dshi_1827 at 1906.960 kb on + strand, within Dshi_1827 at 1906.974 kb on - strand, within Dshi_1827 at 1906.974 kb on - strand, within Dshi_1827 at 1906.984 kb on + strand, within Dshi_1827 at 1907.034 kb on + strand, within Dshi_1827 at 1907.043 kb on - strand, within Dshi_1827 at 1907.074 kb on - strand, within Dshi_1827 at 1907.253 kb on + strand at 1907.365 kb on + strand at 1907.368 kb on - strand at 1907.556 kb on + strand at 1907.564 kb on - strand at 1907.621 kb on - strand, within Dshi_1828 at 1907.684 kb on + strand, within Dshi_1828 at 1907.684 kb on + strand, within Dshi_1828 at 1907.692 kb on - strand, within Dshi_1828 at 1907.886 kb on + strand, within Dshi_1828 at 1907.886 kb on + strand, within Dshi_1828 at 1907.986 kb on - strand, within Dshi_1828 at 1907.996 kb on - strand, within Dshi_1828 at 1908.200 kb on + strand, within Dshi_1828 at 1908.258 kb on + strand, within Dshi_1828
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Paraquat dichloride 0.015 mg/ml remove 1,905,239 - Dshi_1825 0.46 +0.2 1,905,466 + Dshi_1825 0.68 +0.1 1,905,474 - Dshi_1825 0.69 -0.4 1,905,541 - Dshi_1825 0.75 -0.3 1,905,541 - Dshi_1825 0.75 -1.0 1,905,572 - Dshi_1825 0.78 +1.0 1,905,692 + +0.2 1,905,796 + -0.7 1,905,899 - Dshi_1826 0.14 +0.7 1,905,974 + Dshi_1826 0.35 +0.8 1,906,101 - Dshi_1826 0.71 +1.8 1,906,265 + -0.5 1,906,274 + -0.0 1,906,398 + Dshi_1827 0.17 +0.7 1,906,398 + Dshi_1827 0.17 -0.5 1,906,498 + Dshi_1827 0.26 -0.2 1,906,552 - Dshi_1827 0.32 +0.9 1,906,574 + Dshi_1827 0.34 +0.7 1,906,583 + Dshi_1827 0.35 +0.2 1,906,583 + Dshi_1827 0.35 -0.5 1,906,633 - Dshi_1827 0.39 -0.3 1,906,647 - Dshi_1827 0.41 -0.7 1,906,862 + Dshi_1827 0.61 -0.0 1,906,878 + Dshi_1827 0.63 -0.0 1,906,912 - Dshi_1827 0.66 -0.2 1,906,945 + Dshi_1827 0.69 +0.1 1,906,960 + Dshi_1827 0.71 +0.8 1,906,974 - Dshi_1827 0.72 +0.1 1,906,974 - Dshi_1827 0.72 +0.9 1,906,984 + Dshi_1827 0.73 -0.2 1,907,034 + Dshi_1827 0.78 -0.3 1,907,043 - Dshi_1827 0.79 -0.2 1,907,074 - Dshi_1827 0.82 +0.5 1,907,253 + +0.1 1,907,365 + +0.6 1,907,368 - -1.6 1,907,556 + -0.6 1,907,564 - +0.8 1,907,621 - Dshi_1828 0.12 +0.7 1,907,684 + Dshi_1828 0.16 +0.0 1,907,684 + Dshi_1828 0.16 +0.2 1,907,692 - Dshi_1828 0.16 -0.2 1,907,886 + Dshi_1828 0.27 +0.1 1,907,886 + Dshi_1828 0.27 -0.2 1,907,986 - Dshi_1828 0.33 -0.3 1,907,996 - Dshi_1828 0.33 -0.2 1,908,200 + Dshi_1828 0.45 +0.2 1,908,258 + Dshi_1828 0.48 +0.7
Or see this region's nucleotide sequence