Experiment: m.b. Paraquat dichloride 0.015 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dshi_1792 and Dshi_1793 are separated by 62 nucleotides Dshi_1793 and Dshi_1794 are separated by 1 nucleotides Dshi_1794 and Dshi_1795 are separated by 193 nucleotides
Dshi_1792: Dshi_1792 - Lysine exporter protein (LYSE/YGGA) (RefSeq), at 1,862,665 to 1,863,276
_1792
Dshi_1793: Dshi_1793 - Xanthine phosphoribosyltransferase (RefSeq), at 1,863,339 to 1,863,842
_1793
Dshi_1794: Dshi_1794 - aminotransferase class I and II (RefSeq), at 1,863,844 to 1,865,025
_1794
Dshi_1795: Dshi_1795 - putative peptidyl-prolyl cis-trans isomerse D (RefSeq), at 1,865,219 to 1,867,063
_1795
Position (kb)
1863
1864
1865
1866 Strain fitness (log2 ratio)
-1
0
1 at 1863.005 kb on + strand, within Dshi_1792 at 1863.092 kb on + strand, within Dshi_1792 at 1863.182 kb on + strand, within Dshi_1792 at 1863.190 kb on - strand, within Dshi_1792 at 1863.193 kb on + strand, within Dshi_1792 at 1863.238 kb on + strand at 1863.567 kb on - strand, within Dshi_1793 at 1863.736 kb on - strand, within Dshi_1793 at 1863.740 kb on + strand, within Dshi_1793 at 1863.742 kb on - strand, within Dshi_1793 at 1863.795 kb on + strand at 1863.803 kb on - strand at 1863.979 kb on - strand, within Dshi_1794 at 1864.034 kb on - strand, within Dshi_1794 at 1864.164 kb on - strand, within Dshi_1794 at 1864.270 kb on - strand, within Dshi_1794 at 1864.354 kb on + strand, within Dshi_1794 at 1864.402 kb on - strand, within Dshi_1794 at 1864.584 kb on + strand, within Dshi_1794 at 1864.753 kb on + strand, within Dshi_1794 at 1864.767 kb on + strand, within Dshi_1794
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Paraquat dichloride 0.015 mg/ml remove 1,863,005 + Dshi_1792 0.56 -0.2 1,863,092 + Dshi_1792 0.70 -1.0 1,863,182 + Dshi_1792 0.84 +0.1 1,863,190 - Dshi_1792 0.86 +0.3 1,863,193 + Dshi_1792 0.86 +0.1 1,863,238 + +0.2 1,863,567 - Dshi_1793 0.45 +0.3 1,863,736 - Dshi_1793 0.79 +1.1 1,863,740 + Dshi_1793 0.80 +1.1 1,863,742 - Dshi_1793 0.80 +0.7 1,863,795 + +0.6 1,863,803 - +0.4 1,863,979 - Dshi_1794 0.11 -0.6 1,864,034 - Dshi_1794 0.16 +0.2 1,864,164 - Dshi_1794 0.27 +1.7 1,864,270 - Dshi_1794 0.36 +0.2 1,864,354 + Dshi_1794 0.43 -0.5 1,864,402 - Dshi_1794 0.47 +1.4 1,864,584 + Dshi_1794 0.63 +0.7 1,864,753 + Dshi_1794 0.77 -0.6 1,864,767 + Dshi_1794 0.78 -0.1
Or see this region's nucleotide sequence