Strain Fitness in Dinoroseobacter shibae DFL-12 around Dshi_1633

Experiment: m.b. Paraquat dichloride 0.015 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDshi_1632 and Dshi_1633 are separated by 11 nucleotidesDshi_1633 and Dshi_1634 are separated by 171 nucleotidesDshi_1634 and Dshi_1635 are separated by 2 nucleotides Dshi_1632: Dshi_1632 - Cysteine desulfurase (RefSeq), at 1,696,137 to 1,697,183 _1632 Dshi_1633: Dshi_1633 - transcriptional regulator, BadM/Rrf2 family (RefSeq), at 1,697,195 to 1,697,683 _1633 Dshi_1634: Dshi_1634 - hypothetical protein (RefSeq), at 1,697,855 to 1,698,508 _1634 Dshi_1635: Dshi_1635 - hypothetical protein (RefSeq), at 1,698,511 to 1,698,726 _1635 Position (kb) 1697 1698Strain fitness (log2 ratio) -1 0 1at 1696.393 kb on + strand, within Dshi_1632at 1696.544 kb on - strand, within Dshi_1632at 1697.695 kb on - strandat 1698.486 kb on + strandat 1698.660 kb on - strand, within Dshi_1635

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Paraquat dichloride 0.015 mg/ml
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1,696,393 + Dshi_1632 0.24 +1.2
1,696,544 - Dshi_1632 0.39 -0.2
1,697,695 - -0.8
1,698,486 + +0.6
1,698,660 - Dshi_1635 0.69 +0.2

Or see this region's nucleotide sequence