Experiment: m.b. Paraquat dichloride 0.015 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dshi_1384 and Dshi_1385 are separated by 238 nucleotides Dshi_1385 and Dshi_1386 are separated by 3 nucleotides Dshi_1386 and Dshi_1387 are separated by 144 nucleotides
Dshi_1384: Dshi_1384 - permease protein of ABC transporter (RefSeq), at 1,437,354 to 1,438,355
_1384
Dshi_1385: Dshi_1385 - Endoribonuclease L-PSP (RefSeq), at 1,438,594 to 1,438,992
_1385
Dshi_1386: Dshi_1386 - hypothetical protein (RefSeq), at 1,438,996 to 1,440,408
_1386
Dshi_1387: Dshi_1387 - ATP-dependent Clp protease, ATP-binding subunit ClpX (RefSeq), at 1,440,553 to 1,441,812
_1387
Position (kb)
1438
1439
1440
1441 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 1438.234 kb on - strand, within Dshi_1384 at 1438.258 kb on - strand at 1438.298 kb on + strand at 1438.488 kb on + strand at 1438.511 kb on - strand at 1438.532 kb on - strand at 1438.537 kb on - strand at 1438.605 kb on + strand at 1438.645 kb on + strand, within Dshi_1385 at 1438.696 kb on - strand, within Dshi_1385 at 1438.723 kb on + strand, within Dshi_1385 at 1438.941 kb on - strand, within Dshi_1385 at 1438.999 kb on + strand at 1439.338 kb on - strand, within Dshi_1386 at 1439.461 kb on - strand, within Dshi_1386 at 1439.539 kb on - strand, within Dshi_1386 at 1439.615 kb on - strand, within Dshi_1386 at 1439.626 kb on - strand, within Dshi_1386 at 1439.801 kb on - strand, within Dshi_1386 at 1439.895 kb on + strand, within Dshi_1386 at 1439.902 kb on + strand, within Dshi_1386 at 1439.918 kb on + strand, within Dshi_1386 at 1439.951 kb on + strand, within Dshi_1386 at 1440.035 kb on - strand, within Dshi_1386 at 1440.038 kb on + strand, within Dshi_1386 at 1440.333 kb on + strand at 1440.333 kb on + strand at 1440.341 kb on - strand at 1440.341 kb on - strand at 1440.368 kb on - strand at 1440.422 kb on + strand at 1440.430 kb on - strand at 1440.590 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Paraquat dichloride 0.015 mg/ml remove 1,438,234 - Dshi_1384 0.88 +0.1 1,438,258 - +1.3 1,438,298 + +0.4 1,438,488 + +2.0 1,438,511 - -0.1 1,438,532 - -0.1 1,438,537 - -0.8 1,438,605 + -1.5 1,438,645 + Dshi_1385 0.13 +1.0 1,438,696 - Dshi_1385 0.26 +0.3 1,438,723 + Dshi_1385 0.32 -0.8 1,438,941 - Dshi_1385 0.87 +2.2 1,438,999 + -0.5 1,439,338 - Dshi_1386 0.24 +0.3 1,439,461 - Dshi_1386 0.33 -0.1 1,439,539 - Dshi_1386 0.38 +0.2 1,439,615 - Dshi_1386 0.44 +0.1 1,439,626 - Dshi_1386 0.45 +0.4 1,439,801 - Dshi_1386 0.57 +0.3 1,439,895 + Dshi_1386 0.64 +0.0 1,439,902 + Dshi_1386 0.64 -0.1 1,439,918 + Dshi_1386 0.65 +0.5 1,439,951 + Dshi_1386 0.68 +0.1 1,440,035 - Dshi_1386 0.74 +0.1 1,440,038 + Dshi_1386 0.74 -0.0 1,440,333 + +0.9 1,440,333 + -1.8 1,440,341 - +0.3 1,440,341 - +0.2 1,440,368 - -0.6 1,440,422 + +0.1 1,440,430 - +1.7 1,440,590 - -0.0
Or see this region's nucleotide sequence