Strain Fitness in Dinoroseobacter shibae DFL-12 around Dshi_1044

Experiment: m.b. Paraquat dichloride 0.015 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDshi_1043 and Dshi_1044 are separated by 503 nucleotidesDshi_1044 and Dshi_1045 overlap by 4 nucleotidesDshi_1045 and Dshi_1046 overlap by 4 nucleotides Dshi_1043: Dshi_1043 - TRAP dicarboxylate transporter- DctP subunit (RefSeq), at 1,076,851 to 1,077,846 _1043 Dshi_1044: Dshi_1044 - transcriptional regulator, GntR family (RefSeq), at 1,078,350 to 1,079,054 _1044 Dshi_1045: Dshi_1045 - HpcH/HpaI aldolase (RefSeq), at 1,079,051 to 1,079,896 _1045 Dshi_1046: Dshi_1046 - Amidase (RefSeq), at 1,079,893 to 1,081,023 _1046 Position (kb) 1078 1079 1080Strain fitness (log2 ratio) -2 -1 0 1 2at 1077.404 kb on - strand, within Dshi_1043at 1077.627 kb on + strand, within Dshi_1043at 1077.700 kb on - strand, within Dshi_1043at 1077.784 kb on - strandat 1077.856 kb on + strandat 1077.857 kb on - strandat 1077.907 kb on - strandat 1077.965 kb on + strandat 1077.965 kb on + strandat 1078.232 kb on + strandat 1078.270 kb on + strandat 1078.334 kb on + strandat 1078.342 kb on - strandat 1078.556 kb on - strand, within Dshi_1044at 1078.612 kb on - strand, within Dshi_1044at 1078.630 kb on - strand, within Dshi_1044at 1078.679 kb on - strand, within Dshi_1044at 1078.735 kb on + strand, within Dshi_1044at 1078.803 kb on - strand, within Dshi_1044at 1078.933 kb on + strand, within Dshi_1044at 1078.978 kb on + strand, within Dshi_1044at 1079.034 kb on + strandat 1079.246 kb on + strand, within Dshi_1045at 1079.782 kb on + strand, within Dshi_1045at 1079.795 kb on + strand, within Dshi_1045at 1079.802 kb on + strand, within Dshi_1045at 1079.949 kb on + strandat 1079.956 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Paraquat dichloride 0.015 mg/ml
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1,077,404 - Dshi_1043 0.56 -0.4
1,077,627 + Dshi_1043 0.78 +0.5
1,077,700 - Dshi_1043 0.85 -0.7
1,077,784 - +0.2
1,077,856 + +0.1
1,077,857 - +0.3
1,077,907 - -1.8
1,077,965 + -0.4
1,077,965 + +0.5
1,078,232 + +0.7
1,078,270 + -0.4
1,078,334 + -1.8
1,078,342 - -0.7
1,078,556 - Dshi_1044 0.29 -0.2
1,078,612 - Dshi_1044 0.37 -0.5
1,078,630 - Dshi_1044 0.40 +1.2
1,078,679 - Dshi_1044 0.47 +0.7
1,078,735 + Dshi_1044 0.55 +0.4
1,078,803 - Dshi_1044 0.64 +2.3
1,078,933 + Dshi_1044 0.83 +0.2
1,078,978 + Dshi_1044 0.89 +0.6
1,079,034 + -0.2
1,079,246 + Dshi_1045 0.23 +0.6
1,079,782 + Dshi_1045 0.86 +0.3
1,079,795 + Dshi_1045 0.88 -0.3
1,079,802 + Dshi_1045 0.89 -0.0
1,079,949 + +0.9
1,079,956 + -0.4

Or see this region's nucleotide sequence