Experiment: m.b. Paraquat dichloride 0.015 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dshi_1041 and Dshi_1042 are separated by 3 nucleotides Dshi_1042 and Dshi_1043 are separated by 16 nucleotides Dshi_1043 and Dshi_1044 are separated by 503 nucleotides
Dshi_1041: Dshi_1041 - TRAP dicarboxylate transporter, DctM subunit (RefSeq), at 1,075,005 to 1,076,324
_1041
Dshi_1042: Dshi_1042 - Tripartite ATP-independent periplasmic transporter DctQ component (RefSeq), at 1,076,328 to 1,076,834
_1042
Dshi_1043: Dshi_1043 - TRAP dicarboxylate transporter- DctP subunit (RefSeq), at 1,076,851 to 1,077,846
_1043
Dshi_1044: Dshi_1044 - transcriptional regulator, GntR family (RefSeq), at 1,078,350 to 1,079,054
_1044
Position (kb)
1076
1077
1078 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 1076.068 kb on - strand, within Dshi_1041 at 1076.246 kb on - strand at 1076.326 kb on + strand at 1076.411 kb on + strand, within Dshi_1042 at 1076.477 kb on - strand, within Dshi_1042 at 1076.490 kb on - strand, within Dshi_1042 at 1076.648 kb on - strand, within Dshi_1042 at 1076.662 kb on + strand, within Dshi_1042 at 1076.665 kb on - strand, within Dshi_1042 at 1076.670 kb on - strand, within Dshi_1042 at 1076.690 kb on + strand, within Dshi_1042 at 1076.714 kb on + strand, within Dshi_1042 at 1076.807 kb on + strand at 1076.911 kb on + strand at 1076.926 kb on + strand at 1077.007 kb on + strand, within Dshi_1043 at 1077.050 kb on + strand, within Dshi_1043 at 1077.156 kb on + strand, within Dshi_1043 at 1077.239 kb on + strand, within Dshi_1043 at 1077.404 kb on - strand, within Dshi_1043 at 1077.627 kb on + strand, within Dshi_1043 at 1077.700 kb on - strand, within Dshi_1043 at 1077.784 kb on - strand at 1077.856 kb on + strand at 1077.857 kb on - strand at 1077.907 kb on - strand at 1077.965 kb on + strand at 1077.965 kb on + strand at 1078.232 kb on + strand at 1078.270 kb on + strand at 1078.334 kb on + strand at 1078.342 kb on - strand at 1078.556 kb on - strand, within Dshi_1044 at 1078.612 kb on - strand, within Dshi_1044 at 1078.630 kb on - strand, within Dshi_1044 at 1078.679 kb on - strand, within Dshi_1044 at 1078.735 kb on + strand, within Dshi_1044 at 1078.803 kb on - strand, within Dshi_1044
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Paraquat dichloride 0.015 mg/ml remove 1,076,068 - Dshi_1041 0.81 +0.1 1,076,246 - +0.4 1,076,326 + -0.1 1,076,411 + Dshi_1042 0.16 -0.2 1,076,477 - Dshi_1042 0.29 -0.2 1,076,490 - Dshi_1042 0.32 -0.1 1,076,648 - Dshi_1042 0.63 +0.7 1,076,662 + Dshi_1042 0.66 +1.9 1,076,665 - Dshi_1042 0.66 +0.8 1,076,670 - Dshi_1042 0.67 +0.5 1,076,690 + Dshi_1042 0.71 -0.2 1,076,714 + Dshi_1042 0.76 -0.7 1,076,807 + -0.1 1,076,911 + +0.1 1,076,926 + -0.7 1,077,007 + Dshi_1043 0.16 -1.1 1,077,050 + Dshi_1043 0.20 -0.2 1,077,156 + Dshi_1043 0.31 -0.4 1,077,239 + Dshi_1043 0.39 +1.5 1,077,404 - Dshi_1043 0.56 -0.4 1,077,627 + Dshi_1043 0.78 +0.5 1,077,700 - Dshi_1043 0.85 -0.7 1,077,784 - +0.2 1,077,856 + +0.1 1,077,857 - +0.3 1,077,907 - -1.8 1,077,965 + -0.4 1,077,965 + +0.5 1,078,232 + +0.7 1,078,270 + -0.4 1,078,334 + -1.8 1,078,342 - -0.7 1,078,556 - Dshi_1044 0.29 -0.2 1,078,612 - Dshi_1044 0.37 -0.5 1,078,630 - Dshi_1044 0.40 +1.2 1,078,679 - Dshi_1044 0.47 +0.7 1,078,735 + Dshi_1044 0.55 +0.4 1,078,803 - Dshi_1044 0.64 +2.3
Or see this region's nucleotide sequence