Strain Fitness in Pseudomonas fluorescens SBW25-INTG around PFLU_RS31305

Experiment: succinate (C); with MOPS

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	succinate (C); with MOPS
4,570,420	+		PFLU_RS30955	0.46	-1.5
4,570,429	+		PFLU_RS30955	0.48	+0.9
4,570,434	+		PFLU_RS30955	0.48	-0.3
4,570,434	+		PFLU_RS30955	0.48	-1.3
4,570,438	+		PFLU_RS30955	0.49	-1.7
4,570,438	+		PFLU_RS30955	0.49	-1.3
4,570,440	+		PFLU_RS30955	0.49	+1.5
4,570,440	+		PFLU_RS30955	0.49	+1.5
4,570,440	+		PFLU_RS30955	0.49	-1.0
4,570,446	+		PFLU_RS30955	0.50	+1.1
4,570,475	-		PFLU_RS30955	0.54	-0.1
4,570,483	+		PFLU_RS30955	0.55	-1.7
4,570,483	+		PFLU_RS30955	0.55	-1.8
4,570,483	+		PFLU_RS30955	0.55	-0.5
4,570,483	+		PFLU_RS30955	0.55	+3.0
4,570,483	+		PFLU_RS30955	0.55	+1.3
4,570,484	-		PFLU_RS30955	0.55	-0.0
4,570,484	-		PFLU_RS30955	0.55	+1.2
4,570,484	-		PFLU_RS30955	0.55	-1.9
4,570,484	-		PFLU_RS30955	0.55	-0.4
4,570,484	-		PFLU_RS30955	0.55	-0.3
4,570,494	+		PFLU_RS30955	0.56	+2.1
4,570,533	-		PFLU_RS30955	0.61	+0.7
4,570,534	+		PFLU_RS30955	0.62	+0.6
4,570,551	+		PFLU_RS30955	0.64	+0.8
4,570,551	+		PFLU_RS30955	0.64	-1.1
4,570,568	+		PFLU_RS30955	0.66	-0.1
4,570,568	+		PFLU_RS30955	0.66	-0.2
4,570,569	-		PFLU_RS30955	0.66	-0.7
4,570,569	-		PFLU_RS30955	0.66	+3.5
4,570,609	+		PFLU_RS30955	0.72	-1.1
4,570,609	+		PFLU_RS30955	0.72	-0.5
4,570,609	+		PFLU_RS30955	0.72	-0.1
4,570,609	+		PFLU_RS30955	0.72	+0.5
4,570,609	+		PFLU_RS30955	0.72	-0.1
4,570,634	+		PFLU_RS30955	0.75	+0.7
4,570,634	+		PFLU_RS30955	0.75	+1.5
4,570,634	+		PFLU_RS30955	0.75	+1.3
4,570,651	+		PFLU_RS30955	0.77	-1.3
4,570,800	-				-2.1
4,570,818	+				-1.9
4,571,263	+				-0.2
4,571,282	+				-0.1
4,571,322	+				+1.7
4,571,388	-				-0.0
4,571,434	+		PFLU_RS31305	0.24	-0.9
4,571,434	+		PFLU_RS31305	0.24	-0.9
4,571,434	+		PFLU_RS31305	0.24	-1.3
4,571,434	+		PFLU_RS31305	0.24	-0.5
4,571,435	-		PFLU_RS31305	0.25	-0.0
4,571,435	-		PFLU_RS31305	0.25	+0.7
4,571,435	-		PFLU_RS31305	0.25	+1.1
4,571,435	-		PFLU_RS31305	0.25	-0.1
4,571,435	-		PFLU_RS31305	0.25	-1.3
4,571,435	-		PFLU_RS31305	0.25	+2.9
4,571,452	+		PFLU_RS31305	0.41	-0.1
4,571,452	+		PFLU_RS31305	0.41	-0.9
4,571,453	-		PFLU_RS31305	0.42	+2.1
4,571,453	-		PFLU_RS31305	0.42	+0.8
4,571,453	-		PFLU_RS31305	0.42	+1.2
4,571,453	-		PFLU_RS31305	0.42	+0.9
4,571,518	+				+0.1
4,571,562	+				+0.5
4,571,563	-				+0.2
4,571,572	+				-0.1
4,571,573	-				+0.7
4,571,573	-				-0.4
4,571,573	-				+0.2
4,571,573	-				-1.7
4,571,573	-				+0.2
4,571,573	-				+0.5
4,571,573	-				+1.5
4,571,575	+				-1.1
4,571,652	+				+3.0
4,571,673	+				+2.5
4,571,673	+				+2.3
4,571,673	+				+0.1
4,571,674	-				+0.7
4,571,674	-				+0.8
4,571,737	+		PFLU_RS20185	0.28	-0.4
4,571,737	+		PFLU_RS20185	0.28	-0.5
4,571,737	+		PFLU_RS20185	0.28	-0.1
4,571,738	-		PFLU_RS20185	0.28	-0.0
4,571,738	-		PFLU_RS20185	0.28	-1.4
4,571,738	-		PFLU_RS20185	0.28	-1.1
4,571,738	-		PFLU_RS20185	0.28	-0.7
4,571,738	-		PFLU_RS20185	0.28	-0.4
4,571,738	-		PFLU_RS20185	0.28	+0.7
4,571,744	+		PFLU_RS20185	0.31	+0.2
4,571,821	-		PFLU_RS20185	0.63	+0.4
4,571,955	+				+0.3
4,571,955	+				-0.1
4,571,955	+				+1.8
4,571,956	-				-0.8
4,571,982	+				+0.3
4,571,982	+				+0.9
4,571,982	+				-0.5
4,571,982	+				-2.5
4,571,982	+				+2.5
4,571,982	+				-0.2
4,571,982	+				-1.2
4,571,982	+				-0.8
4,571,982	+				+1.0
4,571,982	+				-0.5
4,571,982	+				-0.7
4,571,983	-				+0.7
4,571,983	-				+0.0
4,571,983	-				+0.5
4,571,983	-				+0.2
4,571,983	-				+2.8
4,571,983	-				-0.1
4,571,983	-				-1.9
4,571,983	-				+0.5
4,571,983	-				-0.5
4,571,983	-				+0.5
4,571,983	-				+3.0
4,571,983	-				+0.9
4,571,998	+				-1.1
4,571,998	+				-1.9
4,571,998	+				+0.1
4,571,998	+				-0.3
4,571,998	+				-2.0
4,571,998	+				+0.7
4,571,998	+				+1.9
4,571,998	+				+1.3
4,571,998	+				+1.7
4,571,998	+				-1.9
4,571,998	+				+0.4
4,571,998	+				+0.1
4,571,998	+				+0.5
4,571,999	-				+1.0
4,571,999	-				-2.5
4,571,999	-				+0.0
4,571,999	-				-0.8
4,571,999	-				-0.1
4,572,047	+		PFLU_RS20190	0.11	+0.2
4,572,048	-		PFLU_RS20190	0.12	+0.3
4,572,063	+		PFLU_RS20190	0.16	+1.5
4,572,063	+		PFLU_RS20190	0.16	+2.3
4,572,063	+		PFLU_RS20190	0.16	+0.4
4,572,064	-		PFLU_RS20190	0.16	-2.9
4,572,064	-		PFLU_RS20190	0.16	-1.0
4,572,064	-		PFLU_RS20190	0.16	+1.6
4,572,064	-		PFLU_RS20190	0.16	-1.7
4,572,139	+		PFLU_RS20190	0.37	-1.3
4,572,139	+		PFLU_RS20190	0.37	+0.8
4,572,139	+		PFLU_RS20190	0.37	-0.4
4,572,139	+		PFLU_RS20190	0.37	+0.1
4,572,139	+		PFLU_RS20190	0.37	+0.0
4,572,139	+		PFLU_RS20190	0.37	-0.3
4,572,139	+		PFLU_RS20190	0.37	+0.1
4,572,139	+		PFLU_RS20190	0.37	-2.0
4,572,139	+		PFLU_RS20190	0.37	-2.1
4,572,139	+		PFLU_RS20190	0.37	+0.5
4,572,139	+		PFLU_RS20190	0.37	+1.1
4,572,139	+		PFLU_RS20190	0.37	-1.1
4,572,139	+		PFLU_RS20190	0.37	+1.2
4,572,140	-		PFLU_RS20190	0.38	+1.0
4,572,140	-		PFLU_RS20190	0.38	+0.8
4,572,140	-		PFLU_RS20190	0.38	+0.5
4,572,140	-		PFLU_RS20190	0.38	-1.0
4,572,140	-		PFLU_RS20190	0.38	+1.7
4,572,140	-		PFLU_RS20190	0.38	-0.5
4,572,140	-		PFLU_RS20190	0.38	+0.3
4,572,140	-		PFLU_RS20190	0.38	+0.7
4,572,140	-		PFLU_RS20190	0.38	-1.8
4,572,140	-		PFLU_RS20190	0.38	-1.7
4,572,140	-		PFLU_RS20190	0.38	+0.5
4,572,140	-		PFLU_RS20190	0.38	+1.2
4,572,244	+		PFLU_RS20190	0.67	-0.5
4,572,244	+		PFLU_RS20190	0.67	-0.7
4,572,244	+		PFLU_RS20190	0.67	+1.5
4,572,244	+		PFLU_RS20190	0.67	-1.5
4,572,244	+		PFLU_RS20190	0.67	-0.7
4,572,244	+		PFLU_RS20190	0.67	+0.2
4,572,245	-		PFLU_RS20190	0.67	+0.4
4,572,245	-		PFLU_RS20190	0.67	-0.1
4,572,245	-		PFLU_RS20190	0.67	-0.5
4,572,245	-		PFLU_RS20190	0.67	-1.0
4,572,245	-		PFLU_RS20190	0.67	-0.7
4,572,245	-		PFLU_RS20190	0.67	+0.2
4,572,245	-		PFLU_RS20190	0.67	+1.5
4,572,248	+		PFLU_RS20190	0.68	-0.3
4,572,248	+		PFLU_RS20190	0.68	+1.5
4,572,248	+		PFLU_RS20190	0.68	-1.7
4,572,248	+		PFLU_RS20190	0.68	-1.3
4,572,248	+		PFLU_RS20190	0.68	-1.5
4,572,248	+		PFLU_RS20190	0.68	-0.5
4,572,248	+		PFLU_RS20190	0.68	+0.9
4,572,248	+		PFLU_RS20190	0.68	-0.9
4,572,248	+		PFLU_RS20190	0.68	-1.1
4,572,248	+		PFLU_RS20190	0.68	-2.0
4,572,248	+		PFLU_RS20190	0.68	-2.1
4,572,248	+		PFLU_RS20190	0.68	-1.0
4,572,248	+		PFLU_RS20190	0.68	+0.3
4,572,248	+		PFLU_RS20190	0.68	-2.0
4,572,249	-		PFLU_RS20190	0.68	+1.2
4,572,249	-		PFLU_RS20190	0.68	-0.5
4,572,249	-		PFLU_RS20190	0.68	-2.4
4,572,249	-		PFLU_RS20190	0.68	+0.9
4,572,249	-		PFLU_RS20190	0.68	-0.7
4,572,249	-		PFLU_RS20190	0.68	-0.7
4,572,249	-		PFLU_RS20190	0.68	+0.3
4,572,249	-		PFLU_RS20190	0.68	-2.4
4,572,249	-		PFLU_RS20190	0.68	+0.4
4,572,249	-		PFLU_RS20190	0.68	-1.9
4,572,249	-		PFLU_RS20190	0.68	+1.7
4,572,249	-		PFLU_RS20190	0.68	+0.2
4,572,365	+		PFLU_RS30960	0.18	-0.2
4,572,365	+		PFLU_RS30960	0.18	-0.8
4,572,365	+		PFLU_RS30960	0.18	+1.5
4,572,365	+		PFLU_RS30960	0.18	+0.6
4,572,365	+		PFLU_RS30960	0.18	-1.2
4,572,365	+		PFLU_RS30960	0.18	+1.7
4,572,365	+		PFLU_RS30960	0.18	+0.4
4,572,365	+		PFLU_RS30960	0.18	+0.2
4,572,366	-		PFLU_RS30960	0.19	+2.4
4,572,366	-		PFLU_RS30960	0.19	+0.5
4,572,366	-		PFLU_RS30960	0.19	+0.8
4,572,366	-		PFLU_RS30960	0.19	-0.7
4,572,366	-		PFLU_RS30960	0.19	-0.2
4,572,366	-		PFLU_RS30960	0.19	+1.0
4,572,366	-		PFLU_RS30960	0.19	-1.2
4,572,366	-		PFLU_RS30960	0.19	-2.3
4,572,366	-		PFLU_RS30960	0.19	+0.5
4,572,366	-		PFLU_RS30960	0.19	-2.2
4,572,366	-		PFLU_RS30960	0.19	+1.7
4,572,366	-		PFLU_RS30960	0.19	-0.1
4,572,366	-		PFLU_RS30960	0.19	+2.2
4,572,366	-		PFLU_RS30960	0.19	+0.9
4,572,366	-		PFLU_RS30960	0.19	+0.4
4,572,424	-		PFLU_RS30960	0.66	-1.0
4,572,424	-		PFLU_RS30960	0.66	+1.4
4,572,493	+				-2.0
4,572,493	+				-0.3
4,572,493	+				-0.3
4,572,493	+				+0.0
4,572,493	+				+1.0
4,572,493	+				-0.2
4,572,493	+				+0.7
4,572,493	+				-0.2
4,572,493	+				+0.5
4,572,493	+				+0.6
4,572,493	+				-0.7
4,572,493	+				+0.3
4,572,493	+				+1.5
4,572,493	+				-0.1
4,572,493	+				-1.1
4,572,493	+				+0.1
4,572,493	+				-1.0
4,572,493	+				+1.3
4,572,494	-				-2.2
4,572,494	-				+0.1
4,572,494	-				+0.6
4,572,494	-				-0.3
4,572,494	-				-1.0
4,572,494	-				+0.5
4,572,494	-				+0.9
4,572,494	-				+2.2
4,572,494	-				-0.5
4,572,494	-				-0.5
4,572,494	-				-0.1
4,572,494	-				-1.1
4,572,494	-				+0.6
4,572,494	-				-1.5
4,572,494	-				-0.5
4,572,504	+				-2.0
4,572,504	+				-0.5