Strain Fitness in Pseudomonas fluorescens SBW25-INTG around PFLU_RS28015

Experiment: succinate (C); with MOPS

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	succinate (C); with MOPS
6,237,742	+				+1.0
6,237,742	+				-0.3
6,237,742	+				-0.4
6,237,742	+				-2.6
6,237,742	+				+0.7
6,237,742	+				-1.7
6,237,742	+				-1.0
6,237,742	+				+0.6
6,237,742	+				-1.3
6,237,742	+				-1.9
6,237,742	+				-0.4
6,237,742	+				-1.9
6,237,743	-				+0.8
6,237,743	-				-1.7
6,237,743	-				-1.7
6,237,915	+		PFLU_RS28010	0.24	+0.8
6,237,915	+		PFLU_RS28010	0.24	+1.7
6,237,915	+		PFLU_RS28010	0.24	+1.1
6,237,916	-		PFLU_RS28010	0.24	+1.3
6,237,916	-		PFLU_RS28010	0.24	-0.1
6,237,916	-		PFLU_RS28010	0.24	+0.3
6,237,916	-		PFLU_RS28010	0.24	-0.2
6,237,916	-		PFLU_RS28010	0.24	+0.4
6,237,916	-		PFLU_RS28010	0.24	-1.9
6,237,916	-		PFLU_RS28010	0.24	+2.1
6,238,114	+		PFLU_RS28010	0.46	-0.4
6,238,114	+		PFLU_RS28010	0.46	-0.3
6,238,114	+		PFLU_RS28010	0.46	+0.3
6,238,114	+		PFLU_RS28010	0.46	+1.6
6,238,114	+		PFLU_RS28010	0.46	-0.9
6,238,114	+		PFLU_RS28010	0.46	-1.3
6,238,115	-		PFLU_RS28010	0.47	-0.9
6,238,115	-		PFLU_RS28010	0.47	+0.0
6,238,115	-		PFLU_RS28010	0.47	-1.6
6,238,115	-		PFLU_RS28010	0.47	+1.3
6,238,127	+		PFLU_RS28010	0.48	+1.9
6,238,127	+		PFLU_RS28010	0.48	-1.0
6,238,128	-		PFLU_RS28010	0.48	+0.6
6,238,195	+		PFLU_RS28010	0.56	-1.6
6,238,195	+		PFLU_RS28010	0.56	-2.1
6,238,195	+		PFLU_RS28010	0.56	-0.9
6,238,195	+		PFLU_RS28010	0.56	-0.5
6,238,195	+		PFLU_RS28010	0.56	-2.3
6,238,195	+		PFLU_RS28010	0.56	+0.7
6,238,195	+		PFLU_RS28010	0.56	+1.1
6,238,195	+		PFLU_RS28010	0.56	-0.0
6,238,195	+		PFLU_RS28010	0.56	+0.2
6,238,196	-		PFLU_RS28010	0.56	+0.6
6,238,196	-		PFLU_RS28010	0.56	-1.6
6,238,258	+		PFLU_RS28010	0.63	-1.0
6,238,278	+		PFLU_RS28010	0.65	+0.3
6,238,279	-		PFLU_RS28010	0.65	+0.8
6,238,279	-		PFLU_RS28010	0.65	-2.1
6,238,312	+		PFLU_RS28010	0.69	-0.5
6,238,312	+		PFLU_RS28010	0.69	-2.7
6,238,312	+		PFLU_RS28010	0.69	+0.4
6,238,312	+		PFLU_RS28010	0.69	+0.1
6,238,312	+		PFLU_RS28010	0.69	-0.3
6,238,312	+		PFLU_RS28010	0.69	-0.2
6,238,312	+		PFLU_RS28010	0.69	+2.1
6,238,312	+		PFLU_RS28010	0.69	-1.2
6,238,313	-		PFLU_RS28010	0.69	-2.7
6,238,313	-		PFLU_RS28010	0.69	-1.7
6,238,313	-		PFLU_RS28010	0.69	+0.9
6,238,313	-		PFLU_RS28010	0.69	+1.6
6,238,313	-		PFLU_RS28010	0.69	+0.4
6,238,313	-		PFLU_RS28010	0.69	+0.9
6,238,375	+		PFLU_RS28010	0.76	-0.2
6,238,375	+		PFLU_RS28010	0.76	-0.7
6,238,375	+		PFLU_RS28010	0.76	+0.1
6,238,375	+		PFLU_RS28010	0.76	+1.7
6,238,375	+		PFLU_RS28010	0.76	-1.2
6,238,375	+		PFLU_RS28010	0.76	+1.7
6,238,375	+		PFLU_RS28010	0.76	-0.0
6,238,376	-		PFLU_RS28010	0.76	+1.2
6,238,376	-		PFLU_RS28010	0.76	-1.9
6,238,376	-		PFLU_RS28010	0.76	+2.1
6,238,376	-		PFLU_RS28010	0.76	+0.2
6,238,376	-		PFLU_RS28010	0.76	-2.0
6,238,376	-		PFLU_RS28010	0.76	-0.6
6,238,376	-		PFLU_RS28010	0.76	+0.5
6,238,376	-		PFLU_RS28010	0.76	-1.4
6,238,411	+		PFLU_RS28010	0.80	-0.2
6,238,411	+		PFLU_RS28010	0.80	+0.4
6,238,411	+		PFLU_RS28010	0.80	-0.3
6,238,411	+		PFLU_RS28010	0.80	-1.9
6,238,411	+		PFLU_RS28010	0.80	-0.9
6,238,411	+		PFLU_RS28010	0.80	+0.8
6,238,412	-		PFLU_RS28010	0.80	-0.3
6,238,412	-		PFLU_RS28010	0.80	-0.2
6,238,412	-		PFLU_RS28010	0.80	-0.6
6,238,412	-		PFLU_RS28010	0.80	-0.4
6,238,412	-		PFLU_RS28010	0.80	-0.7
6,238,412	-		PFLU_RS28010	0.80	+0.8
6,238,588	+				+0.6
6,238,588	+				+0.0
6,238,602	+				-2.0
6,238,602	+				+1.1
6,238,602	+				-1.7
6,238,602	+				-0.1
6,238,602	+				+1.2
6,238,602	+				+0.8
6,238,602	+				+0.6
6,238,602	+				-0.4
6,238,603	-				+1.0
6,238,603	-				+1.0
6,238,603	-				-1.4
6,238,603	-				-0.9
6,238,603	-				-0.8
6,238,603	-				+0.6
6,238,610	+				+0.4
6,238,610	+				-0.6
6,238,610	+				-1.1
6,238,611	-				+1.6
6,238,798	+		PFLU_RS28015	0.12	+0.4
6,238,798	+		PFLU_RS28015	0.12	-1.4
6,238,798	+		PFLU_RS28015	0.12	+2.1
6,238,798	+		PFLU_RS28015	0.12	+1.1
6,238,798	+		PFLU_RS28015	0.12	-2.0
6,238,798	+		PFLU_RS28015	0.12	-1.4
6,238,798	+		PFLU_RS28015	0.12	+0.7
6,238,798	+		PFLU_RS28015	0.12	-0.6
6,238,798	+		PFLU_RS28015	0.12	-1.1
6,238,799	-		PFLU_RS28015	0.12	+1.3
6,238,799	-		PFLU_RS28015	0.12	+0.3
6,238,799	-		PFLU_RS28015	0.12	-1.1
6,238,799	-		PFLU_RS28015	0.12	-0.5
6,238,799	-		PFLU_RS28015	0.12	-1.8
6,238,799	-		PFLU_RS28015	0.12	+1.1
6,238,799	-		PFLU_RS28015	0.12	-1.4
6,239,017	+		PFLU_RS28015	0.27	+0.7
6,239,055	+		PFLU_RS28015	0.30	+0.9
6,239,055	+		PFLU_RS28015	0.30	-1.7
6,239,056	-		PFLU_RS28015	0.30	+1.7
6,239,056	-		PFLU_RS28015	0.30	+1.8
6,239,116	+		PFLU_RS28015	0.34	+0.3
6,239,116	+		PFLU_RS28015	0.34	+1.1
6,239,116	+		PFLU_RS28015	0.34	-1.0
6,239,116	+		PFLU_RS28015	0.34	+1.6
6,239,116	+		PFLU_RS28015	0.34	-1.6
6,239,116	+		PFLU_RS28015	0.34	-0.4
6,239,116	+		PFLU_RS28015	0.34	+0.9
6,239,117	-		PFLU_RS28015	0.34	-0.2
6,239,117	-		PFLU_RS28015	0.34	-2.2
6,239,117	-		PFLU_RS28015	0.34	-0.1
6,239,117	-		PFLU_RS28015	0.34	+0.4
6,239,117	-		PFLU_RS28015	0.34	+0.9
6,239,117	-		PFLU_RS28015	0.34	+0.5
6,239,173	+		PFLU_RS28015	0.38	-0.7
6,239,173	+		PFLU_RS28015	0.38	-0.7
6,239,173	+		PFLU_RS28015	0.38	-0.3
6,239,173	+		PFLU_RS28015	0.38	+0.6
6,239,173	+		PFLU_RS28015	0.38	+0.4
6,239,174	-		PFLU_RS28015	0.38	+0.6
6,239,174	-		PFLU_RS28015	0.38	+0.6
6,239,174	-		PFLU_RS28015	0.38	+0.5
6,239,174	-		PFLU_RS28015	0.38	+1.6
6,239,202	-		PFLU_RS28015	0.40	-0.9
6,239,362	+		PFLU_RS28015	0.51	-1.4
6,239,957	+				+0.1
6,239,957	+				-0.1
6,239,957	+				-0.4
6,239,957	+				+1.8
6,239,957	+				-1.2
6,240,069	-				+0.6
6,240,100	+				+0.3
6,240,100	+				-1.0
6,240,100	+				-0.3
6,240,100	+				-1.7
6,240,100	+				-1.2
6,240,100	+				-1.4
6,240,101	-				+0.9
6,240,142	+				+0.7
6,240,143	-				+1.5
6,240,143	-				+0.3
6,240,143	-				-2.1
6,240,143	-				-0.7
6,240,143	-				-2.0
6,240,161	-				+1.9
6,240,163	+				-1.2
6,240,163	+				-0.1
6,240,212	+				-1.0
6,240,212	+				-0.4
6,240,212	+				+2.5
6,240,213	-				-0.4
6,240,213	-				+0.8
6,240,213	-				+1.4
6,240,213	-				+1.7
6,240,350	+		PFLU_RS28020	0.15	-0.0
6,240,350	+		PFLU_RS28020	0.15	-0.0
6,240,351	-		PFLU_RS28020	0.15	-0.7
6,240,351	-		PFLU_RS28020	0.15	-1.7
6,240,586	+		PFLU_RS28020	0.32	-1.0
6,240,635	+		PFLU_RS28020	0.36	-0.9
6,240,635	+		PFLU_RS28020	0.36	+0.6
6,240,636	-		PFLU_RS28020	0.36	+0.1
6,240,636	-		PFLU_RS28020	0.36	-0.2
6,240,705	-		PFLU_RS28020	0.41	-0.7
6,240,940	+		PFLU_RS28020	0.58	+2.0
6,240,940	+		PFLU_RS28020	0.58	+2.1
6,240,940	+		PFLU_RS28020	0.58	+0.1
6,240,941	-		PFLU_RS28020	0.58	-0.7
6,240,941	-		PFLU_RS28020	0.58	-0.7
6,240,941	-		PFLU_RS28020	0.58	-0.9
6,240,993	+		PFLU_RS28020	0.62	+1.4
6,240,993	+		PFLU_RS28020	0.62	+1.8
6,240,994	-		PFLU_RS28020	0.62	-0.4
6,240,994	-		PFLU_RS28020	0.62	+1.3