Strain Fitness in Rhodanobacter denitrificans FW104-10B01 around LRK54_RS17760

Experiment: R2A control

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	R2A control
3,885,540	+		LRK54_RS17755	0.18	+0.8
3,885,540	+		LRK54_RS17755	0.18	+0.4
3,885,541	-		LRK54_RS17755	0.18	-0.2
3,885,541	-		LRK54_RS17755	0.18	-0.8
3,885,691	+		LRK54_RS17755	0.31	-1.2
3,885,692	-		LRK54_RS17755	0.31	-0.2
3,885,692	-		LRK54_RS17755	0.31	+0.7
3,885,713	+		LRK54_RS17755	0.33	+1.0
3,885,713	+		LRK54_RS17755	0.33	+2.4
3,885,713	+		LRK54_RS17755	0.33	+0.4
3,885,713	+		LRK54_RS17755	0.33	-0.0
3,885,713	+		LRK54_RS17755	0.33	+0.4
3,885,713	+		LRK54_RS17755	0.33	-0.6
3,885,714	-		LRK54_RS17755	0.33	-0.9
3,885,714	-		LRK54_RS17755	0.33	-0.6
3,885,714	-		LRK54_RS17755	0.33	+0.6
3,885,714	-		LRK54_RS17755	0.33	-0.6
3,885,847	+		LRK54_RS17755	0.45	+0.5
3,885,847	+		LRK54_RS17755	0.45	-0.6
3,885,847	+		LRK54_RS17755	0.45	+0.8
3,885,847	+		LRK54_RS17755	0.45	+1.0
3,885,847	+		LRK54_RS17755	0.45	-0.8
3,885,847	+		LRK54_RS17755	0.45	-0.0
3,885,847	+		LRK54_RS17755	0.45	-0.2
3,885,848	-		LRK54_RS17755	0.45	-0.8
3,885,848	-		LRK54_RS17755	0.45	-0.8
3,885,848	-		LRK54_RS17755	0.45	-1.1
3,885,848	-		LRK54_RS17755	0.45	-0.3
3,885,848	-		LRK54_RS17755	0.45	-0.0
3,885,892	+		LRK54_RS17755	0.48	+1.0
3,885,893	-		LRK54_RS17755	0.48	+0.3
3,885,915	+		LRK54_RS17755	0.50	+1.6
3,885,915	+		LRK54_RS17755	0.50	-2.0
3,885,916	-		LRK54_RS17755	0.50	+0.4
3,885,919	+		LRK54_RS17755	0.51	+0.2
3,885,919	+		LRK54_RS17755	0.51	-0.8
3,885,920	-		LRK54_RS17755	0.51	+3.6
3,885,920	-		LRK54_RS17755	0.51	-0.8
3,885,920	-		LRK54_RS17755	0.51	-0.8
3,885,920	-		LRK54_RS17755	0.51	+0.4
3,885,920	-		LRK54_RS17755	0.51	-0.4
3,885,920	-		LRK54_RS17755	0.51	+0.1
3,885,920	-		LRK54_RS17755	0.51	+0.0
3,885,920	-		LRK54_RS17755	0.51	+0.1
3,885,920	-		LRK54_RS17755	0.51	+0.8
3,885,995	+		LRK54_RS17755	0.57	+1.4
3,885,996	-		LRK54_RS17755	0.57	+0.1
3,885,996	-		LRK54_RS17755	0.57	+0.4
3,885,996	-		LRK54_RS17755	0.57	+0.4
3,885,996	-		LRK54_RS17755	0.57	+0.4
3,885,996	-		LRK54_RS17755	0.57	-0.3
3,886,066	+		LRK54_RS17755	0.63	-1.3
3,886,067	-		LRK54_RS17755	0.63	+0.5
3,886,067	-		LRK54_RS17755	0.63	-0.5
3,886,067	-		LRK54_RS17755	0.63	-1.7
3,886,127	+		LRK54_RS17755	0.68	+0.8
3,886,127	+		LRK54_RS17755	0.68	+0.1
3,886,127	+		LRK54_RS17755	0.68	-0.3
3,886,127	+		LRK54_RS17755	0.68	+0.7
3,886,127	+		LRK54_RS17755	0.68	+2.0
3,886,128	-		LRK54_RS17755	0.68	-1.3
3,886,128	-		LRK54_RS17755	0.68	+1.2
3,886,128	-		LRK54_RS17755	0.68	-0.3
3,886,128	-		LRK54_RS17755	0.68	-0.3
3,886,128	-		LRK54_RS17755	0.68	-1.3
3,886,128	-		LRK54_RS17755	0.68	-2.1
3,886,148	+		LRK54_RS17755	0.70	+1.6
3,886,149	-		LRK54_RS17755	0.70	-0.4
3,886,149	-		LRK54_RS17755	0.70	+0.4
3,886,149	-		LRK54_RS17755	0.70	+0.2
3,886,202	+		LRK54_RS17755	0.75	+0.8
3,886,202	+		LRK54_RS17755	0.75	-0.0
3,886,203	-		LRK54_RS17755	0.75	-1.2
3,886,203	-		LRK54_RS17755	0.75	+1.0
3,886,203	-		LRK54_RS17755	0.75	+0.8
3,886,277	+		LRK54_RS17755	0.81	-0.0
3,886,277	+		LRK54_RS17755	0.81	+0.8
3,886,277	+		LRK54_RS17755	0.81	+0.1
3,886,277	+		LRK54_RS17755	0.81	+0.6
3,886,277	+		LRK54_RS17755	0.81	+0.4
3,886,277	+		LRK54_RS17755	0.81	-0.5
3,886,277	+		LRK54_RS17755	0.81	+1.8
3,886,277	+		LRK54_RS17755	0.81	+0.8
3,886,277	+		LRK54_RS17755	0.81	+0.2
3,886,277	+		LRK54_RS17755	0.81	-0.7
3,886,277	+		LRK54_RS17755	0.81	-0.6
3,886,277	+		LRK54_RS17755	0.81	+0.2
3,886,277	+		LRK54_RS17755	0.81	+0.5
3,886,277	+		LRK54_RS17755	0.81	+0.0
3,886,277	+		LRK54_RS17755	0.81	+0.9
3,886,277	+		LRK54_RS17755	0.81	+0.5
3,886,277	+		LRK54_RS17755	0.81	-0.7
3,886,277	+		LRK54_RS17755	0.81	+2.0
3,886,277	+		LRK54_RS17755	0.81	-1.0
3,886,277	+		LRK54_RS17755	0.81	+1.2
3,886,277	+		LRK54_RS17755	0.81	-0.5
3,886,277	+		LRK54_RS17755	0.81	-0.0
3,886,277	+		LRK54_RS17755	0.81	+0.6
3,886,277	+		LRK54_RS17755	0.81	-0.5
3,886,277	+		LRK54_RS17755	0.81	-1.2
3,886,277	+		LRK54_RS17755	0.81	-2.3
3,886,277	+		LRK54_RS17755	0.81	-2.5
3,886,277	+		LRK54_RS17755	0.81	+0.6
3,886,277	+		LRK54_RS17755	0.81	+0.3
3,886,277	+		LRK54_RS17755	0.81	+0.4
3,886,277	+		LRK54_RS17755	0.81	-0.7
3,886,277	+		LRK54_RS17755	0.81	-1.1
3,886,277	+		LRK54_RS17755	0.81	-0.6
3,886,277	+		LRK54_RS17755	0.81	+0.2
3,886,277	+		LRK54_RS17755	0.81	-0.5
3,886,277	+		LRK54_RS17755	0.81	+0.2
3,886,277	+		LRK54_RS17755	0.81	-0.2
3,886,277	+		LRK54_RS17755	0.81	-1.7
3,886,277	+		LRK54_RS17755	0.81	+0.2
3,886,277	+		LRK54_RS17755	0.81	-0.3
3,886,277	+		LRK54_RS17755	0.81	+0.7
3,886,278	-		LRK54_RS17755	0.81	-1.0
3,886,278	-		LRK54_RS17755	0.81	+0.4
3,886,278	-		LRK54_RS17755	0.81	+0.9
3,886,278	-		LRK54_RS17755	0.81	+2.0
3,886,278	-		LRK54_RS17755	0.81	+0.7
3,886,278	-		LRK54_RS17755	0.81	-0.3
3,886,278	-		LRK54_RS17755	0.81	-0.1
3,886,278	-		LRK54_RS17755	0.81	+0.9
3,886,278	-		LRK54_RS17755	0.81	+0.4
3,886,278	-		LRK54_RS17755	0.81	+0.1
3,886,278	-		LRK54_RS17755	0.81	-1.0
3,886,278	-		LRK54_RS17755	0.81	-1.6
3,886,278	-		LRK54_RS17755	0.81	-0.5
3,886,278	-		LRK54_RS17755	0.81	-1.8
3,886,278	-		LRK54_RS17755	0.81	-1.3
3,886,278	-		LRK54_RS17755	0.81	-0.7
3,886,278	-		LRK54_RS17755	0.81	+0.3
3,886,278	-		LRK54_RS17755	0.81	-1.1
3,886,278	-		LRK54_RS17755	0.81	+0.4
3,886,278	-		LRK54_RS17755	0.81	-0.0
3,886,278	-		LRK54_RS17755	0.81	-0.9
3,886,278	-		LRK54_RS17755	0.81	-0.2
3,886,278	-		LRK54_RS17755	0.81	-0.6
3,886,278	-		LRK54_RS17755	0.81	+0.4
3,886,278	-		LRK54_RS17755	0.81	-2.0
3,886,278	-		LRK54_RS17755	0.81	+0.4
3,886,278	-		LRK54_RS17755	0.81	-0.2
3,886,278	-		LRK54_RS17755	0.81	-0.2
3,886,278	-		LRK54_RS17755	0.81	+0.8
3,886,278	-		LRK54_RS17755	0.81	-0.2
3,886,278	-		LRK54_RS17755	0.81	-0.6
3,886,278	-		LRK54_RS17755	0.81	+0.2
3,886,278	-		LRK54_RS17755	0.81	+0.2
3,886,278	-		LRK54_RS17755	0.81	-0.3
3,886,278	-		LRK54_RS17755	0.81	-0.6
3,886,278	-		LRK54_RS17755	0.81	+0.7
3,886,278	-		LRK54_RS17755	0.81	-1.2
3,886,278	-		LRK54_RS17755	0.81	+2.3
3,886,278	-		LRK54_RS17755	0.81	-0.5
3,886,319	+		LRK54_RS17755	0.85	-0.6
3,886,319	+		LRK54_RS17755	0.85	-0.3
3,886,319	+		LRK54_RS17755	0.85	+0.4
3,886,319	+		LRK54_RS17755	0.85	+0.4
3,886,320	-		LRK54_RS17755	0.85	-0.4
3,886,320	-		LRK54_RS17755	0.85	-0.6
3,886,420	+				+1.2
3,886,420	+				-0.8
3,886,420	+				+0.7
3,886,420	+				-1.3
3,886,420	+				-0.4
3,886,420	+				+2.0
3,886,420	+				-0.3
3,886,420	+				-1.6
3,886,420	+				-0.3
3,886,420	+				-1.6
3,886,420	+				+0.2
3,886,420	+				+1.0
3,886,420	+				+0.3
3,886,421	-				-0.7
3,886,421	-				+0.4
3,886,421	-				-0.6
3,886,421	-				+0.1
3,886,421	-				+0.4
3,886,421	-				+0.7
3,886,421	-				-0.6
3,886,421	-				+0.4
3,886,421	-				+0.2
3,886,421	-				-1.6
3,886,421	-				-0.0
3,886,421	-				+0.1
3,886,421	-				-0.2
3,886,493	+				-1.2
3,886,493	+				+0.4
3,886,493	+				+1.4
3,886,493	+				+0.6
3,886,494	-				-0.3
3,886,494	-				-0.2
3,886,494	-				+1.0
3,886,494	-				-0.0
3,886,494	-				-0.5
3,886,494	-				-1.2
3,886,527	+				+0.8
3,886,528	-				-1.0
3,886,765	+		LRK54_RS17760	0.37	+0.4
3,886,799	+		LRK54_RS17760	0.43	-0.6
3,886,799	+		LRK54_RS17760	0.43	+0.5
3,887,071	+		LRK54_RS17760	0.87	-0.6
3,887,072	-		LRK54_RS17760	0.87	-0.3
3,887,073	-		LRK54_RS17760	0.87	+1.2
3,887,197	+				+1.2
3,887,197	+				-2.3
3,887,198	-				+2.0
3,887,198	-				+0.9
3,887,198	-				+0.5
3,887,198	-				-1.7
3,887,249	+				+0.7
3,887,249	+				-1.0
3,887,249	+				+0.3
3,887,249	+				+0.4
3,887,249	+				-0.4
3,887,249	+				+1.6
3,887,249	+				+0.2
3,887,249	+				-1.1
3,887,249	+				+0.5
3,887,249	+				-0.6
3,887,274	+		LRK54_RS17765	0.10	+0.2
3,887,274	+		LRK54_RS17765	0.10	-0.2
3,887,274	+		LRK54_RS17765	0.10	+0.8
3,887,274	+		LRK54_RS17765	0.10	+0.3
3,887,274	+		LRK54_RS17765	0.10	-0.1
3,887,274	+		LRK54_RS17765	0.10	-0.3
3,887,274	+		LRK54_RS17765	0.10	+4.0
3,887,274	+		LRK54_RS17765	0.10	+1.0
3,887,274	+		LRK54_RS17765	0.10	-2.1
3,887,274	+		LRK54_RS17765	0.10	+0.0
3,887,274	+		LRK54_RS17765	0.10	-0.6
3,887,274	+		LRK54_RS17765	0.10	+2.0
3,887,274	+		LRK54_RS17765	0.10	+0.0
3,887,274	+		LRK54_RS17765	0.10	-0.4
3,887,274	+		LRK54_RS17765	0.10	-0.5
3,887,274	+		LRK54_RS17765	0.10	-0.2
3,887,275	-		LRK54_RS17765	0.11	-1.0
3,887,275	-		LRK54_RS17765	0.11	-1.6
3,887,275	-		LRK54_RS17765	0.11	+1.1
3,887,275	-		LRK54_RS17765	0.11	-0.8
3,887,275	-		LRK54_RS17765	0.11	+0.1
3,887,275	-		LRK54_RS17765	0.11	-1.7
3,887,275	-		LRK54_RS17765	0.11	-1.3
3,887,275	-		LRK54_RS17765	0.11	+1.3
3,887,275	-		LRK54_RS17765	0.11	+1.2
3,887,297	+		LRK54_RS17765	0.18	+0.4
3,887,297	+		LRK54_RS17765	0.18	-0.4
3,887,297	+		LRK54_RS17765	0.18	-1.6
3,887,297	+		LRK54_RS17765	0.18	-0.0
3,887,297	+		LRK54_RS17765	0.18	-0.6
3,887,297	+		LRK54_RS17765	0.18	-0.7
3,887,297	+		LRK54_RS17765	0.18	-1.8
3,887,297	+		LRK54_RS17765	0.18	-0.3
3,887,297	+		LRK54_RS17765	0.18	-0.0
3,887,297	+		LRK54_RS17765	0.18	-0.4
3,887,298	-		LRK54_RS17765	0.18	-0.3
3,887,298	-		LRK54_RS17765	0.18	-1.5
3,887,298	-		LRK54_RS17765	0.18	+1.0
3,887,298	-		LRK54_RS17765	0.18	-3.2
3,887,298	-		LRK54_RS17765	0.18	+0.1
3,887,298	-		LRK54_RS17765	0.18	+0.4
3,887,298	-		LRK54_RS17765	0.18	-0.8
3,887,298	-		LRK54_RS17765	0.18	+2.0
3,887,298	-		LRK54_RS17765	0.18	+0.6
3,887,488	+		LRK54_RS17765	0.83	-0.8
3,887,488	+		LRK54_RS17765	0.83	+0.1
3,887,488	+		LRK54_RS17765	0.83	-0.4
3,887,489	-		LRK54_RS17765	0.83	+0.4
3,887,489	-		LRK54_RS17765	0.83	+0.5
3,887,489	-		LRK54_RS17765	0.83	+0.1
3,887,489	-		LRK54_RS17765	0.83	-0.1
3,887,550	+				-0.6
3,887,565	+				-2.2
3,887,565	+				-1.3
3,887,565	+				+1.0
3,887,565	+				-1.9
3,887,565	+				-1.1
3,887,565	+				+0.8
3,887,565	+				-1.7
3,887,565	+				-0.5
3,887,565	+				-1.3
3,887,565	+				-0.3
3,887,565	+				-0.2
3,887,565	+				-0.1
3,887,565	+				+1.4
3,887,565	+				-1.0
3,887,565	+				-0.6
3,887,565	+				-1.4
3,887,565	+				+1.0
3,887,565	+				-1.2
3,887,565	+				+0.1
3,887,565	+				+0.4
3,887,565	+				-0.4
3,887,565	+				-0.5
3,887,565	+				+0.8
3,887,565	+				+0.5
3,887,566	-				-0.2
3,887,566	-				-0.2
3,887,566	-				+1.0
3,887,566	-				+0.4
3,887,566	-				+0.9
3,887,566	-				+0.1
3,887,566	-				-0.7
3,887,566	-				-1.1
3,887,566	-				+0.1
3,887,566	-				-1.7
3,887,566	-				+0.4
3,887,566	-				+0.3
3,887,566	-				-0.0
3,887,566	-				+1.0
3,887,566	-				-0.3
3,887,566	-				-1.2
3,887,566	-				-1.0
3,887,566	-				-1.0
3,887,566	-				+1.0
3,887,566	-				+0.1
3,887,566	-				-1.1
3,887,566	-				-0.0
3,887,566	-				+1.2
3,887,566	-				-1.1
3,887,566	-				+0.4
3,887,566	-				-0.2
3,887,566	-				+1.0
3,887,566	-				+1.4
3,887,566	-				+0.1
3,887,566	-				+0.1
3,887,569	+				-0.8
3,887,569	+				+0.8
3,887,569	+				-0.7
3,887,569	+				-0.7
3,887,569	+				+1.0
3,887,569	+				-1.3
3,887,569	+				-0.3
3,887,569	+				+0.9
3,887,569	+				-1.5
3,887,569	+				-0.8
3,887,569	+				-0.2
3,887,569	+				-0.3
3,887,569	+				+1.0
3,887,569	+				+0.2
3,887,569	+				-1.3
3,887,569	+				-0.0
3,887,569	+				-0.1
3,887,569	+				-0.3
3,887,569	+				-0.3
3,887,569	+				+0.7
3,887,569	+				+1.0
3,887,569	+				+0.0
3,887,569	+				+0.5
3,887,569	+				+0.8
3,887,569	+				-1.5
3,887,569	+				+0.6
3,887,569	+				+1.1
3,887,570	-				-0.3
3,887,570	-				+0.4
3,887,570	-				-0.2
3,887,570	-				-0.0
3,887,570	-				-0.8
3,887,570	-				+0.4
3,887,570	-				+3.0
3,887,570	-				+1.0
3,887,570	-				-1.6
3,887,570	-				+0.5
3,887,570	-				-1.1
3,887,570	-				+0.2
3,887,570	-				-0.0
3,887,570	-				-0.4
3,887,570	-				-0.5
3,887,570	-				+0.4
3,887,570	-				+1.0
3,887,570	-				+1.6
3,887,570	-				-0.0
3,887,570	-				-0.7
3,887,570	-				+0.1
3,887,591	+				+1.3
3,887,591	+				-1.3
3,887,591	+				-0.2
3,887,592	-				-0.2
3,887,592	-				-1.5
3,887,608	+				+0.4
3,887,608	+				-1.0
3,887,608	+				+0.3
3,887,609	-				+0.1
3,887,609	-				+0.4
3,887,609	-				-0.9
3,887,704	+		LRK54_RS17770	0.20	+0.4
3,887,704	+		LRK54_RS17770	0.20	-1.3
3,887,704	+		LRK54_RS17770	0.20	-0.3
3,887,704	+		LRK54_RS17770	0.20	-0.9
3,887,704	+		LRK54_RS17770	0.20	+1.1
3,887,704	+		LRK54_RS17770	0.20	-0.9
3,887,704	+		LRK54_RS17770	0.20	+0.8
3,887,704	+		LRK54_RS17770	0.20	-0.6
3,887,704	+		LRK54_RS17770	0.20	+0.4
3,887,704	+		LRK54_RS17770	0.20	-0.8
3,887,705	-		LRK54_RS17770	0.20	+1.6
3,887,705	-		LRK54_RS17770	0.20	+0.3
3,887,820	+		LRK54_RS17770	0.44	+0.5
3,887,820	+		LRK54_RS17770	0.44	+0.8
3,887,820	+		LRK54_RS17770	0.44	+1.2
3,887,820	+		LRK54_RS17770	0.44	+0.5
3,887,821	-		LRK54_RS17770	0.45	+1.2
3,887,827	-		LRK54_RS17770	0.46	-1.1
3,887,899	+		LRK54_RS17770	0.61	+1.4
3,887,900	-		LRK54_RS17770	0.61	-1.3
3,887,900	-		LRK54_RS17770	0.61	-0.2
3,888,043	+				+0.2
3,888,043	+				+0.0
3,888,043	+				+0.4
3,888,043	+				-0.6
3,888,043	+				-1.8
3,888,043	+				+0.6
3,888,043	+				+0.4
3,888,043	+				+0.6
3,888,044	-				-1.5
3,888,044	-				-0.4
3,888,044	-				-0.8
3,888,044	-				+1.4
3,888,044	-				+2.0
3,888,055	+				-0.3
3,888,055	+				+0.4
3,888,055	+				+0.4
3,888,055	+				+0.9
3,888,056	-				+1.8
3,888,056	-				-2.3
3,888,074	+				+0.5
3,888,074	+				-0.2
3,888,074	+				-0.9
3,888,074	+				+0.4
3,888,074	+				+1.4
3,888,074	+				+1.8
3,888,074	+				+1.0
3,888,074	+				-1.8
3,888,074	+				+0.5
3,888,074	+				+0.4
3,888,074	+				-0.9
3,888,074	+				+1.0
3,888,074	+				-0.1
3,888,075	-				-1.4
3,888,075	-				+0.4
3,888,075	-				-0.7
3,888,075	-				+3.0
3,888,075	-				-0.1
3,888,075	-				+1.3
3,888,075	-				-0.0
3,888,075	-				-0.3
3,888,077	-				-1.3
3,888,077	-				-0.2
3,888,099	+				-2.0
3,888,099	+				+1.2
3,888,099	+				+0.4
3,888,100	-				-0.8
3,888,115	+				-1.6
3,888,116	-				+0.5