Strain Fitness in Rhodanobacter denitrificans FW104-10B01 around LRK54_RS15610

Experiment: R2A control

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	R2A control
3,443,212	-		LRK54_RS15600	0.35	-0.7
3,443,212	-		LRK54_RS15600	0.35	-1.8
3,443,212	-		LRK54_RS15600	0.35	-1.3
3,443,250	+		LRK54_RS15600	0.42	-1.3
3,443,250	+		LRK54_RS15600	0.42	-1.8
3,443,251	-		LRK54_RS15600	0.42	-1.5
3,443,259	+		LRK54_RS15600	0.43	-0.6
3,443,260	-		LRK54_RS15600	0.43	-0.9
3,443,260	-		LRK54_RS15600	0.43	-1.7
3,443,283	+		LRK54_RS15600	0.47	-0.5
3,443,314	+		LRK54_RS15600	0.52	-0.7
3,443,385	+		LRK54_RS15600	0.63	-1.4
3,443,385	+		LRK54_RS15600	0.63	+0.4
3,443,603	+				-0.8
3,443,603	+				+1.8
3,443,603	+				-0.6
3,443,604	-				+0.4
3,443,739	+		LRK54_RS15605	0.17	-0.8
3,443,739	+		LRK54_RS15605	0.17	-0.4
3,443,739	+		LRK54_RS15605	0.17	+0.3
3,443,740	-		LRK54_RS15605	0.18	+1.2
3,443,792	-		LRK54_RS15605	0.35	-1.1
3,443,792	-		LRK54_RS15605	0.35	+1.9
3,443,792	-		LRK54_RS15605	0.35	-0.1
3,443,792	-		LRK54_RS15605	0.35	-2.0
3,443,885	+		LRK54_RS15605	0.67	-1.5
3,443,885	+		LRK54_RS15605	0.67	+0.3
3,443,885	+		LRK54_RS15605	0.67	-2.5
3,443,885	+		LRK54_RS15605	0.67	-1.3
3,443,885	+		LRK54_RS15605	0.67	-2.0
3,443,885	+		LRK54_RS15605	0.67	-0.6
3,443,965	+				+1.0
3,443,966	-				-0.9
3,443,966	-				-1.1
3,443,977	+				-1.1
3,443,995	+				-0.7
3,443,995	+				-0.7
3,443,995	+				-0.4
3,443,995	+				-0.4
3,443,995	+				+0.1
3,443,995	+				-1.1
3,443,995	+				-0.2
3,443,995	+				-1.3
3,443,995	+				-0.2
3,443,996	-				+0.2
3,443,996	-				-0.9
3,443,996	-				-1.2
3,444,001	+				+1.3
3,444,103	+				+1.3
3,444,103	+				+0.9
3,444,103	+				-1.5
3,444,103	+				-0.4
3,444,103	+				+1.9
3,444,103	+				+0.2
3,444,103	+				-2.5
3,444,104	-				+1.1
3,444,104	-				-1.8
3,444,104	-				-0.4
3,444,104	-				+0.3
3,444,291	+		LRK54_RS15610	0.11	-0.4
3,444,291	+		LRK54_RS15610	0.11	+0.0
3,444,291	+		LRK54_RS15610	0.11	-0.8
3,444,292	-		LRK54_RS15610	0.11	+0.5
3,444,292	-		LRK54_RS15610	0.11	-1.1
3,444,292	-		LRK54_RS15610	0.11	-0.4
3,444,292	-		LRK54_RS15610	0.11	-1.6
3,444,363	+		LRK54_RS15610	0.16	-1.8
3,444,363	+		LRK54_RS15610	0.16	-0.1
3,444,363	+		LRK54_RS15610	0.16	+0.6
3,444,363	+		LRK54_RS15610	0.16	+0.8
3,444,363	+		LRK54_RS15610	0.16	-1.8
3,444,363	+		LRK54_RS15610	0.16	+2.3
3,444,363	+		LRK54_RS15610	0.16	+0.7
3,444,363	+		LRK54_RS15610	0.16	+0.3
3,444,363	+		LRK54_RS15610	0.16	-0.4
3,444,364	-		LRK54_RS15610	0.16	-0.8
3,444,364	-		LRK54_RS15610	0.16	-0.9
3,444,364	-		LRK54_RS15610	0.16	-1.5
3,444,364	-		LRK54_RS15610	0.16	+0.3
3,444,364	-		LRK54_RS15610	0.16	+0.9
3,444,364	-		LRK54_RS15610	0.16	+0.6
3,444,364	-		LRK54_RS15610	0.16	+1.9
3,444,364	-		LRK54_RS15610	0.16	-1.5
3,444,432	+		LRK54_RS15610	0.21	+0.4
3,444,432	+		LRK54_RS15610	0.21	-0.5
3,444,432	+		LRK54_RS15610	0.21	+0.3
3,444,432	+		LRK54_RS15610	0.21	+1.4
3,444,432	+		LRK54_RS15610	0.21	-2.3
3,444,432	+		LRK54_RS15610	0.21	+0.3
3,444,432	+		LRK54_RS15610	0.21	+0.9
3,444,433	-		LRK54_RS15610	0.21	+0.5
3,444,433	-		LRK54_RS15610	0.21	-1.1
3,444,433	-		LRK54_RS15610	0.21	-1.2
3,444,433	-		LRK54_RS15610	0.21	-0.3
3,444,486	+		LRK54_RS15610	0.25	+1.9
3,444,486	+		LRK54_RS15610	0.25	-0.8
3,444,486	+		LRK54_RS15610	0.25	+0.7
3,444,487	-		LRK54_RS15610	0.25	-0.1
3,444,541	+		LRK54_RS15610	0.29	-0.7
3,444,541	+		LRK54_RS15610	0.29	+2.1
3,444,541	+		LRK54_RS15610	0.29	-0.4
3,444,541	+		LRK54_RS15610	0.29	+0.0
3,444,541	+		LRK54_RS15610	0.29	-1.1
3,444,541	+		LRK54_RS15610	0.29	+2.7
3,444,541	+		LRK54_RS15610	0.29	-2.1
3,444,542	-		LRK54_RS15610	0.29	-0.9
3,444,542	-		LRK54_RS15610	0.29	-1.9
3,444,542	-		LRK54_RS15610	0.29	-0.1
3,444,542	-		LRK54_RS15610	0.29	-0.2
3,444,542	-		LRK54_RS15610	0.29	-2.2
3,444,542	-		LRK54_RS15610	0.29	-1.4
3,444,542	-		LRK54_RS15610	0.29	-0.7
3,444,542	-		LRK54_RS15610	0.29	-0.9
3,444,542	-		LRK54_RS15610	0.29	-0.7
3,444,542	-		LRK54_RS15610	0.29	+1.3
3,444,891	+		LRK54_RS15610	0.54	-0.3
3,444,891	+		LRK54_RS15610	0.54	+0.5
3,444,891	+		LRK54_RS15610	0.54	-0.4
3,444,891	+		LRK54_RS15610	0.54	-1.1
3,444,891	+		LRK54_RS15610	0.54	-0.9
3,444,891	+		LRK54_RS15610	0.54	+0.2
3,444,891	+		LRK54_RS15610	0.54	-0.7
3,444,891	+		LRK54_RS15610	0.54	-0.4
3,444,891	+		LRK54_RS15610	0.54	-0.4
3,444,891	+		LRK54_RS15610	0.54	+0.9
3,444,891	+		LRK54_RS15610	0.54	-0.4
3,444,891	+		LRK54_RS15610	0.54	+1.3
3,444,891	+		LRK54_RS15610	0.54	+0.2
3,444,891	+		LRK54_RS15610	0.54	+0.4
3,444,892	-		LRK54_RS15610	0.54	-0.4
3,444,892	-		LRK54_RS15610	0.54	-0.9
3,444,892	-		LRK54_RS15610	0.54	-0.6
3,444,892	-		LRK54_RS15610	0.54	-0.5
3,444,892	-		LRK54_RS15610	0.54	-0.3
3,444,892	-		LRK54_RS15610	0.54	-0.3
3,444,892	-		LRK54_RS15610	0.54	-1.3
3,444,892	-		LRK54_RS15610	0.54	+3.5
3,444,892	-		LRK54_RS15610	0.54	+0.1
3,444,892	-		LRK54_RS15610	0.54	+0.9
3,444,892	-		LRK54_RS15610	0.54	-1.2
3,445,080	+		LRK54_RS15610	0.67	-0.1
3,445,080	+		LRK54_RS15610	0.67	+0.6
3,445,080	+		LRK54_RS15610	0.67	+1.9
3,445,080	+		LRK54_RS15610	0.67	-0.3
3,445,080	+		LRK54_RS15610	0.67	+0.7
3,445,081	-		LRK54_RS15610	0.67	+0.9
3,445,081	-		LRK54_RS15610	0.67	-1.3
3,445,200	+		LRK54_RS15610	0.76	-0.5
3,445,200	+		LRK54_RS15610	0.76	-0.2
3,445,200	+		LRK54_RS15610	0.76	-0.7
3,445,200	+		LRK54_RS15610	0.76	+0.3
3,445,200	+		LRK54_RS15610	0.76	-0.4
3,445,200	+		LRK54_RS15610	0.76	-1.1
3,445,200	+		LRK54_RS15610	0.76	+0.9
3,445,200	+		LRK54_RS15610	0.76	-1.1
3,445,200	+		LRK54_RS15610	0.76	+0.7
3,445,200	+		LRK54_RS15610	0.76	+1.3
3,445,200	+		LRK54_RS15610	0.76	-0.1
3,445,200	+		LRK54_RS15610	0.76	+0.1
3,445,200	+		LRK54_RS15610	0.76	+0.9
3,445,201	-		LRK54_RS15610	0.76	-0.6
3,445,201	-		LRK54_RS15610	0.76	-1.6
3,445,201	-		LRK54_RS15610	0.76	+0.8
3,445,201	-		LRK54_RS15610	0.76	+0.6
3,445,201	-		LRK54_RS15610	0.76	-0.1
3,445,201	-		LRK54_RS15610	0.76	+0.3
3,445,201	-		LRK54_RS15610	0.76	-0.7
3,445,201	-		LRK54_RS15610	0.76	-2.5
3,445,238	+		LRK54_RS15610	0.79	-1.7
3,445,238	+		LRK54_RS15610	0.79	-0.4
3,445,238	+		LRK54_RS15610	0.79	-0.2
3,445,239	-		LRK54_RS15610	0.79	-0.5
3,445,239	-		LRK54_RS15610	0.79	+0.0
3,445,239	-		LRK54_RS15610	0.79	+0.9
3,445,293	+		LRK54_RS15610	0.83	+1.9
3,445,293	+		LRK54_RS15610	0.83	+0.0
3,445,293	+		LRK54_RS15610	0.83	+0.9
3,445,293	+		LRK54_RS15610	0.83	-3.4
3,445,294	-		LRK54_RS15610	0.83	-1.4
3,445,294	-		LRK54_RS15610	0.83	+0.4
3,445,294	-		LRK54_RS15610	0.83	-1.1
3,445,294	-		LRK54_RS15610	0.83	-0.4
3,445,294	-		LRK54_RS15610	0.83	-0.3
3,445,294	-		LRK54_RS15610	0.83	+0.1
3,445,295	+		LRK54_RS15610	0.83	-0.1
3,445,296	-		LRK54_RS15610	0.83	-0.6
3,445,296	-		LRK54_RS15610	0.83	+2.0
3,445,296	-		LRK54_RS15610	0.83	-0.7
3,445,341	+		LRK54_RS15610	0.86	-0.4
3,445,341	+		LRK54_RS15610	0.86	-1.3
3,445,341	+		LRK54_RS15610	0.86	-0.1
3,445,341	+		LRK54_RS15610	0.86	-1.1
3,445,341	+		LRK54_RS15610	0.86	+2.5
3,445,341	+		LRK54_RS15610	0.86	+1.2
3,445,341	+		LRK54_RS15610	0.86	-0.1
3,445,341	+		LRK54_RS15610	0.86	-0.1
3,445,341	+		LRK54_RS15610	0.86	+0.8
3,445,342	-		LRK54_RS15610	0.86	+0.9
3,445,342	-		LRK54_RS15610	0.86	+0.1
3,445,342	-		LRK54_RS15610	0.86	+1.5
3,445,342	-		LRK54_RS15610	0.86	+1.6
3,445,342	-		LRK54_RS15610	0.86	+0.7
3,445,342	-		LRK54_RS15610	0.86	+0.9
3,445,360	+		LRK54_RS15610	0.87	+0.9
3,445,360	+		LRK54_RS15610	0.87	+0.1
3,445,360	+		LRK54_RS15610	0.87	-0.4
3,445,360	+		LRK54_RS15610	0.87	-1.7
3,445,360	+		LRK54_RS15610	0.87	-0.4
3,445,360	+		LRK54_RS15610	0.87	-0.7
3,445,360	+		LRK54_RS15610	0.87	+1.9
3,445,360	+		LRK54_RS15610	0.87	+1.4
3,445,360	+		LRK54_RS15610	0.87	-0.5
3,445,361	-		LRK54_RS15610	0.87	-1.4
3,445,361	-		LRK54_RS15610	0.87	-1.0
3,445,482	+				-0.5
3,445,483	-				+0.7
3,445,533	+				+0.3
3,445,533	+				-0.3
3,445,533	+				-2.9
3,445,534	-				-0.1
3,445,534	-				-0.7
3,445,534	-				+0.8
3,445,579	+				-0.1
3,445,579	+				-0.4
3,445,579	+				+0.2
3,445,579	+				-0.1
3,445,579	+				+0.1
3,445,579	+				+0.0
3,445,579	+				-0.4
3,445,579	+				+1.3
3,445,580	-				-0.7
3,445,580	-				-0.6
3,445,580	-				+0.5
3,445,580	-				+1.3
3,445,580	-				-0.2
3,445,580	-				+0.5
3,445,699	+		LRK54_RS15615	0.23	+0.6
3,445,699	+		LRK54_RS15615	0.23	+0.1
3,445,699	+		LRK54_RS15615	0.23	+0.0
3,445,699	+		LRK54_RS15615	0.23	+0.3
3,445,699	+		LRK54_RS15615	0.23	+1.1
3,445,700	-		LRK54_RS15615	0.23	+1.9
3,445,700	-		LRK54_RS15615	0.23	+0.3
3,445,700	-		LRK54_RS15615	0.23	+0.7
3,445,700	-		LRK54_RS15615	0.23	-0.3
3,445,700	-		LRK54_RS15615	0.23	+0.4
3,445,700	-		LRK54_RS15615	0.23	-0.0
3,445,700	-		LRK54_RS15615	0.23	-0.5
3,445,700	-		LRK54_RS15615	0.23	-0.8
3,445,700	-		LRK54_RS15615	0.23	-1.4
3,445,700	-		LRK54_RS15615	0.23	-0.6
3,445,792	+		LRK54_RS15615	0.37	-0.4
3,445,792	+		LRK54_RS15615	0.37	-0.1
3,445,793	-		LRK54_RS15615	0.37	+0.0
3,445,831	+		LRK54_RS15615	0.43	+0.0
3,445,897	+		LRK54_RS15615	0.53	+1.3
3,445,897	+		LRK54_RS15615	0.53	-0.9
3,445,897	+		LRK54_RS15615	0.53	-0.5
3,445,897	+		LRK54_RS15615	0.53	-0.9
3,445,897	+		LRK54_RS15615	0.53	-0.4
3,445,897	+		LRK54_RS15615	0.53	+0.3
3,445,897	+		LRK54_RS15615	0.53	-2.8
3,445,897	+		LRK54_RS15615	0.53	-1.0
3,445,897	+		LRK54_RS15615	0.53	+0.5
3,445,897	+		LRK54_RS15615	0.53	+0.0
3,445,897	+		LRK54_RS15615	0.53	+0.3
3,445,897	+		LRK54_RS15615	0.53	-0.7
3,445,897	+		LRK54_RS15615	0.53	-0.4
3,445,897	+		LRK54_RS15615	0.53	-1.1
3,445,897	+		LRK54_RS15615	0.53	-0.3
3,445,897	+		LRK54_RS15615	0.53	-0.4
3,445,897	+		LRK54_RS15615	0.53	-0.1
3,445,897	+		LRK54_RS15615	0.53	+0.5
3,445,897	+		LRK54_RS15615	0.53	+0.3
3,445,897	+		LRK54_RS15615	0.53	-0.9
3,445,897	+		LRK54_RS15615	0.53	+1.9
3,445,897	+		LRK54_RS15615	0.53	-0.7
3,445,898	-		LRK54_RS15615	0.53	+0.0
3,445,898	-		LRK54_RS15615	0.53	+0.5
3,445,898	-		LRK54_RS15615	0.53	+0.1
3,445,898	-		LRK54_RS15615	0.53	+0.3
3,445,898	-		LRK54_RS15615	0.53	+0.1
3,445,898	-		LRK54_RS15615	0.53	-0.7
3,445,898	-		LRK54_RS15615	0.53	-1.1
3,445,898	-		LRK54_RS15615	0.53	-0.3
3,445,898	-		LRK54_RS15615	0.53	-1.5
3,445,898	-		LRK54_RS15615	0.53	+0.1
3,445,898	-		LRK54_RS15615	0.53	+0.7
3,445,898	-		LRK54_RS15615	0.53	+0.6
3,445,898	-		LRK54_RS15615	0.53	+0.0
3,445,898	-		LRK54_RS15615	0.53	+0.9
3,445,898	-		LRK54_RS15615	0.53	-0.7
3,445,993	+		LRK54_RS15615	0.67	-0.1
3,445,993	+		LRK54_RS15615	0.67	-0.1
3,445,994	-		LRK54_RS15615	0.68	-0.2
3,445,994	-		LRK54_RS15615	0.68	-0.2
3,445,994	-		LRK54_RS15615	0.68	-2.3
3,445,994	-		LRK54_RS15615	0.68	-0.8
3,445,994	-		LRK54_RS15615	0.68	+0.3
3,445,994	-		LRK54_RS15615	0.68	+0.3
3,445,994	-		LRK54_RS15615	0.68	-0.9
3,446,143	+				-0.3
3,446,143	+				+1.7
3,446,144	-				-1.1
3,446,144	-				-0.5
3,446,144	-				+0.3
3,446,144	-				+0.1
3,446,144	-				-0.7
3,446,170	+				-0.2
3,446,170	+				-0.7
3,446,170	+				+0.6
3,446,170	+				-0.5
3,446,170	+				+0.9
3,446,171	-				-0.1
3,446,171	-				-0.4
3,446,171	-				+0.9
3,446,171	-				+0.7
3,446,171	-				-2.8
3,446,171	-				-0.7
3,446,171	-				+0.9
3,446,171	-				-0.3
3,446,191	+				+0.6
3,446,191	+				-1.4
3,446,191	+				+0.3
3,446,191	+				-0.4
3,446,192	-				+1.9
3,446,192	-				-0.4
3,446,192	-				+0.2
3,446,192	-				-1.5
3,446,192	-				+0.5
3,446,382	+				-2.0
3,446,382	+				+0.2
3,446,382	+				+0.1
3,446,382	+				+0.9
3,446,493	-		LRK54_RS15620	0.51	-1.8