Strain Fitness in Rhodanobacter denitrificans FW104-10B01 around LRK54_RS14445

Experiment: R2A control

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	R2A control
3,210,868	+		LRK54_RS14435	0.52	+0.3
3,210,869	-		LRK54_RS14435	0.52	+1.9
3,210,869	-		LRK54_RS14435	0.52	-0.7
3,210,869	-		LRK54_RS14435	0.52	+0.5
3,210,869	-		LRK54_RS14435	0.52	-0.9
3,210,949	+		LRK54_RS14435	0.69	-0.7
3,210,949	+		LRK54_RS14435	0.69	-0.8
3,210,949	+		LRK54_RS14435	0.69	-0.7
3,210,949	+		LRK54_RS14435	0.69	-0.2
3,210,949	+		LRK54_RS14435	0.69	-0.7
3,210,949	+		LRK54_RS14435	0.69	-2.1
3,210,949	+		LRK54_RS14435	0.69	-0.9
3,210,950	-		LRK54_RS14435	0.70	-0.1
3,210,950	-		LRK54_RS14435	0.70	+0.1
3,211,066	+				-1.8
3,211,066	+				+0.3
3,211,066	+				-1.0
3,211,066	+				+1.3
3,211,066	+				-0.3
3,211,066	+				+1.4
3,211,066	+				+0.0
3,211,066	+				+0.5
3,211,067	-				+0.9
3,211,067	-				+0.3
3,211,067	-				-1.1
3,211,067	-				+0.4
3,211,067	-				-0.1
3,211,067	-				+0.4
3,211,067	-				-0.1
3,211,190	-				-0.7
3,211,190	-				+0.9
3,211,285	+		LRK54_RS14440	0.22	-0.0
3,211,285	+		LRK54_RS14440	0.22	-0.7
3,211,285	+		LRK54_RS14440	0.22	+1.9
3,211,285	+		LRK54_RS14440	0.22	-0.6
3,211,286	-		LRK54_RS14440	0.23	+0.7
3,211,286	-		LRK54_RS14440	0.23	-0.8
3,211,286	-		LRK54_RS14440	0.23	-0.5
3,211,372	+		LRK54_RS14440	0.37	-0.1
3,211,372	+		LRK54_RS14440	0.37	-0.5
3,211,372	+		LRK54_RS14440	0.37	-0.6
3,211,372	+		LRK54_RS14440	0.37	-0.9
3,211,372	+		LRK54_RS14440	0.37	-1.3
3,211,372	+		LRK54_RS14440	0.37	-0.2
3,211,372	+		LRK54_RS14440	0.37	-1.7
3,211,372	+		LRK54_RS14440	0.37	-0.6
3,211,372	+		LRK54_RS14440	0.37	-0.7
3,211,372	+		LRK54_RS14440	0.37	+0.1
3,211,372	+		LRK54_RS14440	0.37	-0.0
3,211,373	-		LRK54_RS14440	0.37	+0.7
3,211,373	-		LRK54_RS14440	0.37	-0.4
3,211,373	-		LRK54_RS14440	0.37	-0.0
3,211,373	-		LRK54_RS14440	0.37	-1.6
3,211,373	-		LRK54_RS14440	0.37	-0.1
3,211,373	-		LRK54_RS14440	0.37	-0.7
3,211,373	-		LRK54_RS14440	0.37	+2.3
3,211,373	-		LRK54_RS14440	0.37	-0.7
3,211,373	-		LRK54_RS14440	0.37	-0.0
3,211,373	-		LRK54_RS14440	0.37	-2.2
3,211,373	-		LRK54_RS14440	0.37	-0.1
3,211,373	-		LRK54_RS14440	0.37	+0.5
3,211,373	-		LRK54_RS14440	0.37	-0.9
3,211,373	-		LRK54_RS14440	0.37	-0.2
3,211,373	-		LRK54_RS14440	0.37	+0.7
3,211,373	-		LRK54_RS14440	0.37	+2.5
3,211,373	-		LRK54_RS14440	0.37	-1.6
3,211,373	-		LRK54_RS14440	0.37	-1.0
3,211,373	-		LRK54_RS14440	0.37	-1.5
3,211,373	-		LRK54_RS14440	0.37	-0.7
3,211,378	+		LRK54_RS14440	0.38	+0.5
3,211,378	+		LRK54_RS14440	0.38	-0.6
3,211,378	+		LRK54_RS14440	0.38	-1.9
3,211,379	-		LRK54_RS14440	0.38	+0.4
3,211,379	-		LRK54_RS14440	0.38	-0.5
3,211,379	-		LRK54_RS14440	0.38	+0.0
3,211,379	-		LRK54_RS14440	0.38	-1.1
3,211,379	-		LRK54_RS14440	0.38	+0.9
3,211,379	-		LRK54_RS14440	0.38	+0.6
3,211,379	-		LRK54_RS14440	0.38	+0.3
3,211,387	+		LRK54_RS14440	0.40	+0.8
3,211,387	+		LRK54_RS14440	0.40	-0.3
3,211,387	+		LRK54_RS14440	0.40	-1.0
3,211,387	+		LRK54_RS14440	0.40	+1.1
3,211,387	+		LRK54_RS14440	0.40	+0.5
3,211,387	+		LRK54_RS14440	0.40	+0.1
3,211,387	+		LRK54_RS14440	0.40	-0.3
3,211,388	-		LRK54_RS14440	0.40	-2.3
3,211,388	-		LRK54_RS14440	0.40	-1.3
3,211,388	-		LRK54_RS14440	0.40	+0.1
3,211,388	-		LRK54_RS14440	0.40	+0.7
3,211,388	-		LRK54_RS14440	0.40	-0.5
3,211,388	-		LRK54_RS14440	0.40	-0.6
3,211,388	-		LRK54_RS14440	0.40	+1.1
3,211,388	-		LRK54_RS14440	0.40	-0.4
3,211,388	-		LRK54_RS14440	0.40	+1.9
3,211,388	-		LRK54_RS14440	0.40	-0.1
3,211,388	-		LRK54_RS14440	0.40	+0.3
3,211,388	-		LRK54_RS14440	0.40	-1.1
3,211,708	+				+1.6
3,211,708	+				-0.7
3,211,708	+				-0.1
3,211,708	+				+0.9
3,211,708	+				-0.1
3,211,708	+				-0.1
3,211,708	+				-0.9
3,211,709	-				-0.9
3,211,709	-				+0.1
3,211,709	-				-0.5
3,211,709	-				+0.0
3,211,709	-				-0.1
3,211,709	-				-0.6
3,211,709	-				-0.1
3,211,813	+				-2.2
3,211,856	+				+0.6
3,211,856	+				-1.5
3,211,856	+				-0.3
3,211,856	+				+0.3
3,211,857	-				+0.4
3,211,857	-				-0.5
3,211,857	-				-0.3
3,211,857	-				+0.5
3,211,857	-				-1.7
3,211,857	-				+0.3
3,211,857	-				+0.9
3,211,857	-				-0.7
3,211,922	+		LRK54_RS14445	0.32	-0.5
3,211,922	+		LRK54_RS14445	0.32	+0.4
3,211,922	+		LRK54_RS14445	0.32	-0.1
3,211,922	+		LRK54_RS14445	0.32	-0.1
3,211,922	+		LRK54_RS14445	0.32	+0.1
3,211,922	+		LRK54_RS14445	0.32	-0.5
3,211,923	-		LRK54_RS14445	0.32	+0.1
3,211,923	-		LRK54_RS14445	0.32	-1.5
3,211,923	-		LRK54_RS14445	0.32	-0.8
3,211,923	-		LRK54_RS14445	0.32	+0.4
3,211,923	-		LRK54_RS14445	0.32	+0.6
3,211,923	-		LRK54_RS14445	0.32	-0.7
3,211,923	-		LRK54_RS14445	0.32	-0.6
3,211,923	-		LRK54_RS14445	0.32	+1.4
3,211,955	+		LRK54_RS14445	0.46	+1.1
3,211,955	+		LRK54_RS14445	0.46	+0.3
3,211,956	-		LRK54_RS14445	0.46	-2.3
3,211,956	-		LRK54_RS14445	0.46	+1.0
3,211,956	-		LRK54_RS14445	0.46	+0.2
3,212,039	+		LRK54_RS14445	0.83	+1.9
3,212,039	+		LRK54_RS14445	0.83	-0.5
3,212,040	-		LRK54_RS14445	0.83	-0.3
3,212,040	-		LRK54_RS14445	0.83	-0.0
3,212,075	+				+0.9
3,212,075	+				-0.9
3,212,076	-				-0.2
3,212,076	-				+0.3
3,212,076	-				-0.5
3,212,213	+		LRK54_RS14450	0.19	-1.3
3,212,214	-		LRK54_RS14450	0.19	+0.3
3,212,423	+		LRK54_RS14450	0.61	+0.9
3,212,423	+		LRK54_RS14450	0.61	+0.7
3,212,423	+		LRK54_RS14450	0.61	+0.1
3,212,569	+		LRK54_RS14450	0.90	-0.3
3,212,569	+		LRK54_RS14450	0.90	-0.1
3,212,569	+		LRK54_RS14450	0.90	-0.5
3,212,569	+		LRK54_RS14450	0.90	-0.4
3,212,569	+		LRK54_RS14450	0.90	-1.0
3,212,569	+		LRK54_RS14450	0.90	-1.8
3,213,061	-				-0.1
3,213,061	-				-1.3
3,213,061	-				-1.7