Strain Fitness in Rhodanobacter denitrificans FW104-10B01 around LRK54_RS10085

Experiment: R2A control

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	R2A control
2,216,552	-				+0.3
2,216,582	+				+0.3
2,216,583	-				+0.1
2,216,583	-				-0.9
2,216,603	+				-0.1
2,216,603	+				-0.5
2,216,603	+				+0.6
2,216,603	+				-0.1
2,216,603	+				-1.2
2,216,603	+				+0.2
2,216,603	+				-0.0
2,216,603	+				-1.3
2,216,603	+				-0.2
2,216,603	+				+0.4
2,216,603	+				+0.1
2,216,603	+				+2.4
2,216,603	+				+1.1
2,216,604	-				-0.7
2,216,604	-				-0.0
2,216,604	-				+0.4
2,216,604	-				-0.6
2,216,604	-				+0.9
2,216,604	-				-0.0
2,216,604	-				-1.1
2,216,604	-				-0.6
2,216,816	+		LRK54_RS10085	0.16	+1.6
2,216,817	-		LRK54_RS10085	0.16	+1.7
2,216,817	-		LRK54_RS10085	0.16	+1.5
2,216,817	-		LRK54_RS10085	0.16	+1.1
2,216,817	-		LRK54_RS10085	0.16	+2.0
2,216,817	-		LRK54_RS10085	0.16	+1.7
2,217,053	+		LRK54_RS10085	0.39	+0.9
2,217,053	+		LRK54_RS10085	0.39	+1.3
2,217,053	+		LRK54_RS10085	0.39	+1.3
2,217,053	+		LRK54_RS10085	0.39	+1.3
2,217,053	+		LRK54_RS10085	0.39	+1.6
2,217,053	+		LRK54_RS10085	0.39	+1.6
2,217,053	+		LRK54_RS10085	0.39	+3.5
2,217,054	-		LRK54_RS10085	0.39	+1.5
2,217,054	-		LRK54_RS10085	0.39	+0.6
2,217,054	-		LRK54_RS10085	0.39	+1.8
2,217,054	-		LRK54_RS10085	0.39	+2.6
2,217,054	-		LRK54_RS10085	0.39	+1.2
2,217,164	+		LRK54_RS10085	0.49	+2.0
2,217,164	+		LRK54_RS10085	0.49	+1.7
2,217,164	+		LRK54_RS10085	0.49	+0.1
2,217,164	+		LRK54_RS10085	0.49	+1.5
2,217,164	+		LRK54_RS10085	0.49	+1.1
2,217,164	+		LRK54_RS10085	0.49	+1.6
2,217,164	+		LRK54_RS10085	0.49	+1.3
2,217,164	+		LRK54_RS10085	0.49	+1.8
2,217,165	-		LRK54_RS10085	0.49	+1.4
2,217,165	-		LRK54_RS10085	0.49	+1.5
2,217,165	-		LRK54_RS10085	0.49	+0.9
2,217,165	-		LRK54_RS10085	0.49	+2.5
2,217,165	-		LRK54_RS10085	0.49	+1.5
2,217,165	-		LRK54_RS10085	0.49	+1.3
2,217,165	-		LRK54_RS10085	0.49	+2.1
2,217,165	-		LRK54_RS10085	0.49	+2.1
2,217,165	-		LRK54_RS10085	0.49	+1.0
2,217,209	+		LRK54_RS10085	0.54	+1.8
2,217,209	+		LRK54_RS10085	0.54	+0.8
2,217,209	+		LRK54_RS10085	0.54	+2.0
2,217,209	+		LRK54_RS10085	0.54	+1.2
2,217,209	+		LRK54_RS10085	0.54	+0.3
2,217,209	+		LRK54_RS10085	0.54	+1.2
2,217,209	+		LRK54_RS10085	0.54	+0.9
2,217,210	-		LRK54_RS10085	0.54	+3.2
2,217,210	-		LRK54_RS10085	0.54	+1.9
2,217,210	-		LRK54_RS10085	0.54	+2.3
2,217,210	-		LRK54_RS10085	0.54	+2.1
2,217,210	-		LRK54_RS10085	0.54	+1.6
2,217,210	-		LRK54_RS10085	0.54	+0.8
2,217,210	-		LRK54_RS10085	0.54	+1.9
2,217,210	-		LRK54_RS10085	0.54	+1.3
2,217,210	-		LRK54_RS10085	0.54	+1.2
2,217,210	-		LRK54_RS10085	0.54	-0.6
2,217,210	-		LRK54_RS10085	0.54	+1.3
2,217,368	+		LRK54_RS10085	0.69	+1.0
2,217,368	+		LRK54_RS10085	0.69	+1.7
2,217,368	+		LRK54_RS10085	0.69	+0.8
2,217,368	+		LRK54_RS10085	0.69	+0.0
2,217,368	+		LRK54_RS10085	0.69	+0.2
2,217,368	+		LRK54_RS10085	0.69	+1.7
2,217,368	+		LRK54_RS10085	0.69	+0.3
2,217,368	+		LRK54_RS10085	0.69	+0.3
2,217,368	+		LRK54_RS10085	0.69	+0.0
2,217,368	+		LRK54_RS10085	0.69	+1.1
2,217,368	+		LRK54_RS10085	0.69	+1.4
2,217,368	+		LRK54_RS10085	0.69	+1.4
2,217,368	+		LRK54_RS10085	0.69	+1.1
2,217,369	-		LRK54_RS10085	0.69	+0.0
2,217,369	-		LRK54_RS10085	0.69	-0.3
2,217,369	-		LRK54_RS10085	0.69	+0.0
2,217,369	-		LRK54_RS10085	0.69	+1.1
2,217,369	-		LRK54_RS10085	0.69	+0.3
2,217,369	-		LRK54_RS10085	0.69	+2.1
2,217,369	-		LRK54_RS10085	0.69	+1.1
2,217,369	-		LRK54_RS10085	0.69	+1.5
2,217,369	-		LRK54_RS10085	0.69	+0.7
2,217,369	-		LRK54_RS10085	0.69	+1.3
2,217,369	-		LRK54_RS10085	0.69	+1.6
2,217,369	-		LRK54_RS10085	0.69	+0.1
2,217,369	-		LRK54_RS10085	0.69	+1.6
2,217,369	-		LRK54_RS10085	0.69	+1.9
2,217,392	+		LRK54_RS10085	0.71	-0.6
2,217,392	+		LRK54_RS10085	0.71	+0.4
2,217,392	+		LRK54_RS10085	0.71	-0.9
2,217,392	+		LRK54_RS10085	0.71	+1.0
2,217,392	+		LRK54_RS10085	0.71	+3.0
2,217,392	+		LRK54_RS10085	0.71	+1.5
2,217,392	+		LRK54_RS10085	0.71	+1.6
2,217,392	+		LRK54_RS10085	0.71	+1.0
2,217,392	+		LRK54_RS10085	0.71	+1.4
2,217,392	+		LRK54_RS10085	0.71	-0.3
2,217,392	+		LRK54_RS10085	0.71	+1.7
2,217,392	+		LRK54_RS10085	0.71	+1.8
2,217,392	+		LRK54_RS10085	0.71	-0.1
2,217,392	+		LRK54_RS10085	0.71	-0.6
2,217,392	+		LRK54_RS10085	0.71	+1.2
2,217,392	+		LRK54_RS10085	0.71	+1.6
2,217,392	+		LRK54_RS10085	0.71	+1.9
2,217,392	+		LRK54_RS10085	0.71	+1.1
2,217,392	+		LRK54_RS10085	0.71	+0.6
2,217,392	+		LRK54_RS10085	0.71	+1.7
2,217,392	+		LRK54_RS10085	0.71	+3.3
2,217,392	+		LRK54_RS10085	0.71	-0.7
2,217,392	+		LRK54_RS10085	0.71	+0.4
2,217,392	+		LRK54_RS10085	0.71	+2.3
2,217,392	+		LRK54_RS10085	0.71	+0.7
2,217,392	+		LRK54_RS10085	0.71	+1.9
2,217,392	+		LRK54_RS10085	0.71	-0.1
2,217,392	+		LRK54_RS10085	0.71	+2.1
2,217,392	+		LRK54_RS10085	0.71	+1.8
2,217,393	-		LRK54_RS10085	0.71	+3.1
2,217,393	-		LRK54_RS10085	0.71	+0.8
2,217,393	-		LRK54_RS10085	0.71	+0.1
2,217,393	-		LRK54_RS10085	0.71	+1.5
2,217,393	-		LRK54_RS10085	0.71	+0.8
2,217,393	-		LRK54_RS10085	0.71	+1.5
2,217,393	-		LRK54_RS10085	0.71	+0.3
2,217,393	-		LRK54_RS10085	0.71	+3.0
2,217,393	-		LRK54_RS10085	0.71	+1.3
2,217,393	-		LRK54_RS10085	0.71	+1.7
2,217,393	-		LRK54_RS10085	0.71	+1.6
2,217,393	-		LRK54_RS10085	0.71	+1.2
2,217,393	-		LRK54_RS10085	0.71	+2.1
2,217,393	-		LRK54_RS10085	0.71	+2.1
2,217,393	-		LRK54_RS10085	0.71	+1.7
2,217,393	-		LRK54_RS10085	0.71	+1.9
2,217,393	-		LRK54_RS10085	0.71	+1.2
2,217,393	-		LRK54_RS10085	0.71	+1.0
2,217,393	-		LRK54_RS10085	0.71	+0.5
2,217,393	-		LRK54_RS10085	0.71	+1.8
2,217,393	-		LRK54_RS10085	0.71	+2.2
2,217,393	-		LRK54_RS10085	0.71	+1.5
2,217,393	-		LRK54_RS10085	0.71	+1.7
2,217,393	-		LRK54_RS10085	0.71	+1.2
2,217,393	-		LRK54_RS10085	0.71	+1.4
2,217,393	-		LRK54_RS10085	0.71	-1.4
2,217,393	-		LRK54_RS10085	0.71	+2.1
2,217,393	-		LRK54_RS10085	0.71	+1.8
2,217,393	-		LRK54_RS10085	0.71	+1.8
2,217,393	-		LRK54_RS10085	0.71	+1.0
2,217,393	-		LRK54_RS10085	0.71	+1.1
2,217,393	-		LRK54_RS10085	0.71	+1.4
2,217,393	-		LRK54_RS10085	0.71	+0.4
2,217,393	-		LRK54_RS10085	0.71	+2.9
2,217,393	-		LRK54_RS10085	0.71	+1.3
2,217,393	-		LRK54_RS10085	0.71	+2.1
2,217,601	+				+1.9
2,217,601	+				+1.2
2,217,602	-				+2.0
2,217,602	-				+3.0
2,217,602	-				+0.4
2,217,602	-				+2.1
2,217,602	-				+1.9
2,217,602	-				+1.0
2,217,653	+				+1.9
2,217,653	+				+2.0
2,217,654	-				+1.3
2,217,654	-				+1.8
2,217,654	-				+1.4
2,217,662	+				+2.5
2,217,662	+				+1.6
2,217,662	+				+0.7
2,217,662	+				+0.6
2,217,663	-				-1.4
2,217,663	-				+1.9
2,217,663	-				+2.5
2,217,663	-				+2.1
2,217,663	-				+1.2
2,217,663	-				+0.7
2,217,663	-				+2.6
2,217,663	-				+0.8
2,217,663	-				+2.1
2,217,663	-				+1.6
2,217,663	-				+0.9
2,217,663	-				+1.9
2,217,663	-				+0.9
2,217,766	+				-0.1
2,217,766	+				+1.0
2,217,766	+				+2.1
2,217,766	+				+0.4
2,217,766	+				-0.5
2,217,766	+				-0.1
2,217,766	+				+0.2
2,217,767	-				-0.1
2,217,767	-				+0.1
2,217,767	-				+0.7
2,217,767	-				+0.6
2,217,767	-				+0.7
2,217,767	-				-1.4
2,217,767	-				-0.5
2,217,767	-				-0.8
2,217,769	+				+1.9
2,217,769	+				-0.6
2,217,769	+				+0.6
2,217,770	-				-0.4
2,217,770	-				+1.1
2,217,770	-				-1.0
2,217,770	-				+0.6
2,217,784	+		LRK54_RS10090	0.11	-0.9
2,217,784	+		LRK54_RS10090	0.11	-0.6
2,217,784	+		LRK54_RS10090	0.11	-0.9
2,217,784	+		LRK54_RS10090	0.11	+2.2
2,217,784	+		LRK54_RS10090	0.11	-1.1
2,217,784	+		LRK54_RS10090	0.11	+1.9
2,217,784	+		LRK54_RS10090	0.11	+1.3
2,217,784	+		LRK54_RS10090	0.11	+0.4
2,217,784	+		LRK54_RS10090	0.11	+0.6
2,217,784	+		LRK54_RS10090	0.11	+1.3
2,217,784	+		LRK54_RS10090	0.11	+0.9
2,217,784	+		LRK54_RS10090	0.11	-0.4
2,217,784	+		LRK54_RS10090	0.11	-0.1
2,217,784	+		LRK54_RS10090	0.11	+1.2
2,217,784	+		LRK54_RS10090	0.11	+0.3
2,217,784	+		LRK54_RS10090	0.11	-1.1
2,217,784	+		LRK54_RS10090	0.11	+1.2
2,217,785	-		LRK54_RS10090	0.11	-0.9
2,217,785	-		LRK54_RS10090	0.11	+0.1
2,217,785	-		LRK54_RS10090	0.11	-1.2
2,217,785	-		LRK54_RS10090	0.11	-0.6
2,217,785	-		LRK54_RS10090	0.11	-0.7
2,217,785	-		LRK54_RS10090	0.11	+0.9
2,217,785	-		LRK54_RS10090	0.11	+0.4
2,217,785	-		LRK54_RS10090	0.11	+0.8
2,217,785	-		LRK54_RS10090	0.11	-0.6
2,217,785	-		LRK54_RS10090	0.11	-1.1
2,217,785	-		LRK54_RS10090	0.11	-0.4
2,217,785	-		LRK54_RS10090	0.11	-1.1
2,217,785	-		LRK54_RS10090	0.11	-0.7
2,217,785	-		LRK54_RS10090	0.11	-0.3
2,217,785	-		LRK54_RS10090	0.11	+0.1
2,217,793	+		LRK54_RS10090	0.12	+1.0
2,217,793	+		LRK54_RS10090	0.12	-0.6
2,217,793	+		LRK54_RS10090	0.12	+1.3
2,217,793	+		LRK54_RS10090	0.12	-0.9
2,217,794	-		LRK54_RS10090	0.12	+0.3
2,217,794	-		LRK54_RS10090	0.12	-0.1
2,217,794	-		LRK54_RS10090	0.12	-1.8
2,217,794	-		LRK54_RS10090	0.12	+1.0
2,217,794	-		LRK54_RS10090	0.12	-0.4
2,217,794	-		LRK54_RS10090	0.12	-0.3
2,217,794	-		LRK54_RS10090	0.12	+1.9
2,217,794	-		LRK54_RS10090	0.12	-0.1
2,217,859	+		LRK54_RS10090	0.20	+1.1
2,217,859	+		LRK54_RS10090	0.20	+0.7
2,217,859	+		LRK54_RS10090	0.20	+0.5
2,217,859	+		LRK54_RS10090	0.20	+0.4
2,217,859	+		LRK54_RS10090	0.20	+0.4
2,217,859	+		LRK54_RS10090	0.20	+1.6
2,217,859	+		LRK54_RS10090	0.20	-1.3
2,217,859	+		LRK54_RS10090	0.20	+1.4
2,217,859	+		LRK54_RS10090	0.20	+3.0
2,217,859	+		LRK54_RS10090	0.20	+0.1
2,217,859	+		LRK54_RS10090	0.20	+0.9
2,217,859	+		LRK54_RS10090	0.20	+0.7
2,217,859	+		LRK54_RS10090	0.20	+0.3
2,217,859	+		LRK54_RS10090	0.20	+2.1
2,217,859	+		LRK54_RS10090	0.20	+0.2
2,217,859	+		LRK54_RS10090	0.20	+0.7
2,217,859	+		LRK54_RS10090	0.20	+4.5
2,217,859	+		LRK54_RS10090	0.20	+1.1
2,217,859	+		LRK54_RS10090	0.20	+0.5
2,217,859	+		LRK54_RS10090	0.20	-0.1
2,217,859	+		LRK54_RS10090	0.20	+1.1
2,217,859	+		LRK54_RS10090	0.20	+0.2
2,217,859	+		LRK54_RS10090	0.20	+0.9
2,217,860	-		LRK54_RS10090	0.20	-0.4
2,217,860	-		LRK54_RS10090	0.20	+0.1
2,217,860	-		LRK54_RS10090	0.20	+0.1
2,217,860	-		LRK54_RS10090	0.20	-0.9
2,217,860	-		LRK54_RS10090	0.20	+0.8
2,217,860	-		LRK54_RS10090	0.20	+0.9
2,217,860	-		LRK54_RS10090	0.20	+0.9
2,217,860	-		LRK54_RS10090	0.20	-2.4
2,217,860	-		LRK54_RS10090	0.20	+0.3
2,217,860	-		LRK54_RS10090	0.20	+0.5
2,217,860	-		LRK54_RS10090	0.20	-1.8
2,217,860	-		LRK54_RS10090	0.20	-1.0
2,217,860	-		LRK54_RS10090	0.20	+0.1
2,217,860	-		LRK54_RS10090	0.20	-0.7
2,217,860	-		LRK54_RS10090	0.20	-1.2
2,217,883	+		LRK54_RS10090	0.23	+0.3
2,217,883	+		LRK54_RS10090	0.23	+0.4
2,217,883	+		LRK54_RS10090	0.23	+0.3
2,217,883	+		LRK54_RS10090	0.23	+0.4
2,217,883	+		LRK54_RS10090	0.23	+0.3
2,217,884	-		LRK54_RS10090	0.23	-0.7
2,217,884	-		LRK54_RS10090	0.23	+0.9
2,217,884	-		LRK54_RS10090	0.23	-2.1
2,217,884	-		LRK54_RS10090	0.23	-0.8
2,217,884	-		LRK54_RS10090	0.23	-0.1
2,217,884	-		LRK54_RS10090	0.23	-0.7
2,217,884	-		LRK54_RS10090	0.23	+1.9
2,217,884	-		LRK54_RS10090	0.23	+1.1
2,218,096	+		LRK54_RS10090	0.49	-0.9
2,218,096	+		LRK54_RS10090	0.49	+1.9
2,218,096	+		LRK54_RS10090	0.49	-0.3
2,218,096	+		LRK54_RS10090	0.49	+1.1
2,218,096	+		LRK54_RS10090	0.49	+0.7
2,218,096	+		LRK54_RS10090	0.49	+0.2
2,218,096	+		LRK54_RS10090	0.49	+0.1
2,218,096	+		LRK54_RS10090	0.49	+0.6
2,218,096	+		LRK54_RS10090	0.49	+0.8
2,218,096	+		LRK54_RS10090	0.49	-0.8
2,218,096	+		LRK54_RS10090	0.49	+0.3
2,218,097	-		LRK54_RS10090	0.50	+0.4
2,218,097	-		LRK54_RS10090	0.50	-1.0
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