Strain Fitness in Rhodanobacter denitrificans FW104-10B01 around LRK54_RS06035

Experiment: R2A control

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntLRK54_RS06020 and LRK54_RS06025 are separated by 10 nucleotidesLRK54_RS06025 and LRK54_RS06030 are separated by 8 nucleotidesLRK54_RS06030 and LRK54_RS06035 overlap by 4 nucleotidesLRK54_RS06035 and LRK54_RS06040 overlap by 8 nucleotidesLRK54_RS06040 and LRK54_RS06045 overlap by 1 nucleotidesLRK54_RS06045 and LRK54_RS06050 overlap by 4 nucleotides LRK54_RS06020: LRK54_RS06020 - GPW/gp25 family protein, at 1,299,366 to 1,299,725 _RS06020 LRK54_RS06025: LRK54_RS06025 - hypothetical protein, at 1,299,736 to 1,300,062 _RS06025 LRK54_RS06030: LRK54_RS06030 - phage baseplate assembly protein V, at 1,300,071 to 1,300,577 _RS06030 LRK54_RS06035: LRK54_RS06035 - hypothetical protein, at 1,300,574 to 1,301,710 _RS06035 LRK54_RS06040: LRK54_RS06040 - LysM peptidoglycan-binding domain-containing protein, at 1,301,703 to 1,302,023 _RS06040 LRK54_RS06045: LRK54_RS06045 - hypothetical protein, at 1,302,023 to 1,302,679 _RS06045 LRK54_RS06050: LRK54_RS06050 - CHAP domain-containing protein, at 1,302,676 to 1,303,452 _RS06050 Position (kb) 1300 1301 1302Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 1300.072 kb on + strandat 1300.072 kb on + strandat 1300.072 kb on + strandat 1300.072 kb on + strandat 1300.072 kb on + strandat 1300.072 kb on + strandat 1300.073 kb on - strandat 1300.073 kb on - strandat 1300.073 kb on - strandat 1300.073 kb on - strandat 1300.358 kb on - strand, within LRK54_RS06030at 1300.417 kb on + strand, within LRK54_RS06030at 1300.417 kb on + strand, within LRK54_RS06030at 1300.418 kb on - strand, within LRK54_RS06030at 1300.418 kb on - strand, within LRK54_RS06030at 1300.418 kb on - strand, within LRK54_RS06030at 1300.547 kb on + strandat 1300.555 kb on + strandat 1300.555 kb on + strandat 1300.555 kb on + strandat 1300.555 kb on + strandat 1300.556 kb on - strandat 1300.556 kb on - strandat 1300.677 kb on + strandat 1300.677 kb on + strandat 1300.677 kb on + strandat 1300.677 kb on + strandat 1300.677 kb on + strandat 1300.677 kb on + strandat 1300.677 kb on + strandat 1300.677 kb on + strandat 1300.677 kb on + strandat 1300.677 kb on + strandat 1300.678 kb on - strandat 1300.678 kb on - strandat 1300.678 kb on - strandat 1300.678 kb on - strandat 1300.678 kb on - strandat 1300.678 kb on - strandat 1300.678 kb on - strandat 1300.678 kb on - strandat 1300.678 kb on - strandat 1300.678 kb on - strandat 1300.842 kb on + strand, within LRK54_RS06035at 1300.842 kb on + strand, within LRK54_RS06035at 1300.842 kb on + strand, within LRK54_RS06035at 1300.842 kb on + strand, within LRK54_RS06035at 1300.843 kb on - strand, within LRK54_RS06035at 1300.843 kb on - strand, within LRK54_RS06035at 1300.843 kb on - strand, within LRK54_RS06035at 1300.843 kb on - strand, within LRK54_RS06035at 1300.843 kb on - strand, within LRK54_RS06035at 1300.971 kb on + strand, within LRK54_RS06035at 1300.971 kb on + strand, within LRK54_RS06035at 1300.971 kb on + strand, within LRK54_RS06035at 1300.971 kb on + strand, within LRK54_RS06035at 1300.971 kb on + strand, within LRK54_RS06035at 1300.972 kb on - strand, within LRK54_RS06035at 1300.972 kb on - strand, within LRK54_RS06035at 1300.972 kb on - strand, within LRK54_RS06035at 1300.972 kb on - strand, within LRK54_RS06035at 1300.972 kb on - strand, within LRK54_RS06035at 1301.004 kb on + strand, within LRK54_RS06035at 1301.075 kb on + strand, within LRK54_RS06035at 1301.075 kb on + strand, within LRK54_RS06035at 1301.075 kb on + strand, within LRK54_RS06035at 1301.075 kb on + strand, within LRK54_RS06035at 1301.076 kb on - strand, within LRK54_RS06035at 1301.076 kb on - strand, within LRK54_RS06035at 1301.076 kb on - strand, within LRK54_RS06035at 1301.076 kb on - strand, within LRK54_RS06035at 1301.076 kb on - strand, within LRK54_RS06035at 1301.076 kb on - strand, within LRK54_RS06035at 1301.076 kb on - strand, within LRK54_RS06035at 1301.136 kb on + strand, within LRK54_RS06035at 1301.136 kb on + strand, within LRK54_RS06035at 1301.136 kb on + strand, within LRK54_RS06035at 1301.137 kb on - strand, within LRK54_RS06035at 1301.137 kb on - strand, within LRK54_RS06035at 1301.137 kb on - strand, within LRK54_RS06035at 1301.137 kb on - strand, within LRK54_RS06035at 1301.145 kb on + strand, within LRK54_RS06035at 1301.146 kb on - strand, within LRK54_RS06035at 1301.146 kb on - strand, within LRK54_RS06035at 1301.146 kb on - strand, within LRK54_RS06035at 1301.175 kb on + strand, within LRK54_RS06035at 1301.175 kb on + strand, within LRK54_RS06035at 1301.175 kb on + strand, within LRK54_RS06035at 1301.175 kb on + strand, within LRK54_RS06035at 1301.175 kb on + strand, within LRK54_RS06035at 1301.175 kb on + strand, within LRK54_RS06035at 1301.176 kb on - strand, within LRK54_RS06035at 1301.176 kb on - strand, within LRK54_RS06035at 1301.176 kb on - strand, within LRK54_RS06035at 1301.176 kb on - strand, within LRK54_RS06035at 1301.176 kb on - strand, within LRK54_RS06035at 1301.176 kb on - strand, within LRK54_RS06035at 1301.176 kb on - strand, within LRK54_RS06035at 1301.176 kb on - strand, within LRK54_RS06035at 1301.176 kb on - strand, within LRK54_RS06035at 1301.176 kb on - strand, within LRK54_RS06035at 1301.176 kb on - strand, within LRK54_RS06035at 1301.206 kb on + strand, within LRK54_RS06035at 1301.206 kb on + strand, within LRK54_RS06035at 1301.206 kb on + strand, within LRK54_RS06035at 1301.206 kb on + strand, within LRK54_RS06035at 1301.207 kb on - strand, within LRK54_RS06035at 1301.207 kb on - strand, within LRK54_RS06035at 1301.277 kb on + strand, within LRK54_RS06035at 1301.277 kb on + strand, within LRK54_RS06035at 1301.277 kb on + strand, within LRK54_RS06035at 1301.277 kb on + strand, within LRK54_RS06035at 1301.277 kb on + strand, within LRK54_RS06035at 1301.277 kb on + strand, within LRK54_RS06035at 1301.277 kb on + strand, within LRK54_RS06035at 1301.277 kb on + strand, within LRK54_RS06035at 1301.278 kb on - strand, within LRK54_RS06035at 1301.278 kb on - strand, within LRK54_RS06035at 1301.278 kb on - strand, within LRK54_RS06035at 1301.278 kb on - strand, within LRK54_RS06035at 1301.404 kb on + strand, within LRK54_RS06035at 1301.404 kb on + strand, within LRK54_RS06035at 1301.404 kb on + strand, within LRK54_RS06035at 1301.404 kb on + strand, within LRK54_RS06035at 1301.404 kb on + strand, within LRK54_RS06035at 1301.405 kb on - strand, within LRK54_RS06035at 1301.839 kb on + strand, within LRK54_RS06040at 1301.839 kb on + strand, within LRK54_RS06040at 1301.839 kb on + strand, within LRK54_RS06040at 1301.840 kb on - strand, within LRK54_RS06040at 1301.840 kb on - strand, within LRK54_RS06040at 1301.840 kb on - strand, within LRK54_RS06040at 1301.840 kb on - strand, within LRK54_RS06040at 1301.938 kb on + strand, within LRK54_RS06040at 1301.938 kb on + strand, within LRK54_RS06040at 1301.938 kb on + strand, within LRK54_RS06040at 1301.938 kb on + strand, within LRK54_RS06040at 1301.938 kb on + strand, within LRK54_RS06040at 1301.938 kb on + strand, within LRK54_RS06040at 1301.939 kb on - strand, within LRK54_RS06040at 1301.939 kb on - strand, within LRK54_RS06040at 1301.939 kb on - strand, within LRK54_RS06040at 1301.978 kb on + strand, within LRK54_RS06040at 1301.978 kb on + strand, within LRK54_RS06040at 1301.979 kb on - strand, within LRK54_RS06040at 1301.979 kb on - strand, within LRK54_RS06040at 1302.099 kb on + strand, within LRK54_RS06045at 1302.099 kb on + strand, within LRK54_RS06045at 1302.099 kb on + strand, within LRK54_RS06045at 1302.099 kb on + strand, within LRK54_RS06045at 1302.099 kb on + strand, within LRK54_RS06045at 1302.099 kb on + strand, within LRK54_RS06045at 1302.099 kb on + strand, within LRK54_RS06045at 1302.100 kb on - strand, within LRK54_RS06045at 1302.100 kb on - strand, within LRK54_RS06045at 1302.100 kb on - strand, within LRK54_RS06045at 1302.100 kb on - strand, within LRK54_RS06045at 1302.100 kb on - strand, within LRK54_RS06045at 1302.100 kb on - strand, within LRK54_RS06045at 1302.100 kb on - strand, within LRK54_RS06045at 1302.100 kb on - strand, within LRK54_RS06045at 1302.100 kb on - strand, within LRK54_RS06045at 1302.100 kb on - strand, within LRK54_RS06045at 1302.100 kb on - strand, within LRK54_RS06045at 1302.100 kb on - strand, within LRK54_RS06045at 1302.363 kb on + strand, within LRK54_RS06045at 1302.364 kb on - strand, within LRK54_RS06045at 1302.582 kb on + strand, within LRK54_RS06045at 1302.582 kb on + strand, within LRK54_RS06045at 1302.582 kb on + strand, within LRK54_RS06045at 1302.582 kb on + strand, within LRK54_RS06045at 1302.582 kb on + strand, within LRK54_RS06045at 1302.582 kb on + strand, within LRK54_RS06045at 1302.582 kb on + strand, within LRK54_RS06045at 1302.582 kb on + strand, within LRK54_RS06045at 1302.582 kb on + strand, within LRK54_RS06045at 1302.583 kb on - strand, within LRK54_RS06045at 1302.583 kb on - strand, within LRK54_RS06045at 1302.583 kb on - strand, within LRK54_RS06045at 1302.583 kb on - strand, within LRK54_RS06045at 1302.583 kb on - strand, within LRK54_RS06045at 1302.583 kb on - strand, within LRK54_RS06045at 1302.583 kb on - strand, within LRK54_RS06045at 1302.583 kb on - strand, within LRK54_RS06045

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Per-strain Table

Position Strand Gene LocusTag Fraction R2A control
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1,300,072 + -0.4
1,300,072 + -0.4
1,300,072 + +0.4
1,300,072 + +0.6
1,300,072 + +0.3
1,300,072 + -1.0
1,300,073 - +0.8
1,300,073 - +0.5
1,300,073 - +0.8
1,300,073 - -0.3
1,300,358 - LRK54_RS06030 0.57 -0.4
1,300,417 + LRK54_RS06030 0.68 -0.5
1,300,417 + LRK54_RS06030 0.68 +0.0
1,300,418 - LRK54_RS06030 0.68 -0.7
1,300,418 - LRK54_RS06030 0.68 -0.3
1,300,418 - LRK54_RS06030 0.68 -2.2
1,300,547 + -0.2
1,300,555 + -3.0
1,300,555 + +0.6
1,300,555 + -1.2
1,300,555 + +0.0
1,300,556 - +0.4
1,300,556 - +0.7
1,300,677 + +0.8
1,300,677 + +1.3
1,300,677 + +0.6
1,300,677 + -0.6
1,300,677 + -1.0
1,300,677 + -0.5
1,300,677 + +0.8
1,300,677 + +0.0
1,300,677 + +0.7
1,300,677 + +3.4
1,300,678 - -2.1
1,300,678 - -0.6
1,300,678 - -0.2
1,300,678 - +0.5
1,300,678 - -0.4
1,300,678 - -0.3
1,300,678 - -0.4
1,300,678 - -0.1
1,300,678 - -0.3
1,300,678 - +0.0
1,300,842 + LRK54_RS06035 0.24 +0.6
1,300,842 + LRK54_RS06035 0.24 -0.5
1,300,842 + LRK54_RS06035 0.24 +0.3
1,300,842 + LRK54_RS06035 0.24 +0.4
1,300,843 - LRK54_RS06035 0.24 -0.3
1,300,843 - LRK54_RS06035 0.24 +0.8
1,300,843 - LRK54_RS06035 0.24 -0.7
1,300,843 - LRK54_RS06035 0.24 -2.0
1,300,843 - LRK54_RS06035 0.24 -1.1
1,300,971 + LRK54_RS06035 0.35 +0.4
1,300,971 + LRK54_RS06035 0.35 -0.3
1,300,971 + LRK54_RS06035 0.35 +0.2
1,300,971 + LRK54_RS06035 0.35 -2.0
1,300,971 + LRK54_RS06035 0.35 -1.0
1,300,972 - LRK54_RS06035 0.35 -1.5
1,300,972 - LRK54_RS06035 0.35 -0.5
1,300,972 - LRK54_RS06035 0.35 +0.8
1,300,972 - LRK54_RS06035 0.35 -0.2
1,300,972 - LRK54_RS06035 0.35 -0.9
1,301,004 + LRK54_RS06035 0.38 -1.0
1,301,075 + LRK54_RS06035 0.44 +1.8
1,301,075 + LRK54_RS06035 0.44 +0.2
1,301,075 + LRK54_RS06035 0.44 -1.5
1,301,075 + LRK54_RS06035 0.44 -0.7
1,301,076 - LRK54_RS06035 0.44 -0.2
1,301,076 - LRK54_RS06035 0.44 -0.3
1,301,076 - LRK54_RS06035 0.44 +0.1
1,301,076 - LRK54_RS06035 0.44 -1.4
1,301,076 - LRK54_RS06035 0.44 -0.2
1,301,076 - LRK54_RS06035 0.44 +0.1
1,301,076 - LRK54_RS06035 0.44 -0.9
1,301,136 + LRK54_RS06035 0.49 -0.9
1,301,136 + LRK54_RS06035 0.49 -0.2
1,301,136 + LRK54_RS06035 0.49 -1.0
1,301,137 - LRK54_RS06035 0.50 +0.1
1,301,137 - LRK54_RS06035 0.50 -0.5
1,301,137 - LRK54_RS06035 0.50 +0.3
1,301,137 - LRK54_RS06035 0.50 +0.4
1,301,145 + LRK54_RS06035 0.50 -0.0
1,301,146 - LRK54_RS06035 0.50 -1.4
1,301,146 - LRK54_RS06035 0.50 +1.0
1,301,146 - LRK54_RS06035 0.50 +0.1
1,301,175 + LRK54_RS06035 0.53 +0.1
1,301,175 + LRK54_RS06035 0.53 -0.4
1,301,175 + LRK54_RS06035 0.53 -0.8
1,301,175 + LRK54_RS06035 0.53 -0.4
1,301,175 + LRK54_RS06035 0.53 +0.6
1,301,175 + LRK54_RS06035 0.53 -0.6
1,301,176 - LRK54_RS06035 0.53 +0.0
1,301,176 - LRK54_RS06035 0.53 +0.5
1,301,176 - LRK54_RS06035 0.53 -0.0
1,301,176 - LRK54_RS06035 0.53 +0.7
1,301,176 - LRK54_RS06035 0.53 -0.2
1,301,176 - LRK54_RS06035 0.53 -0.2
1,301,176 - LRK54_RS06035 0.53 +0.7
1,301,176 - LRK54_RS06035 0.53 +0.0
1,301,176 - LRK54_RS06035 0.53 -0.4
1,301,176 - LRK54_RS06035 0.53 -0.3
1,301,176 - LRK54_RS06035 0.53 +0.1
1,301,206 + LRK54_RS06035 0.56 -1.5
1,301,206 + LRK54_RS06035 0.56 -0.2
1,301,206 + LRK54_RS06035 0.56 +1.1
1,301,206 + LRK54_RS06035 0.56 +0.7
1,301,207 - LRK54_RS06035 0.56 +1.4
1,301,207 - LRK54_RS06035 0.56 +0.8
1,301,277 + LRK54_RS06035 0.62 -2.2
1,301,277 + LRK54_RS06035 0.62 +0.0
1,301,277 + LRK54_RS06035 0.62 +0.8
1,301,277 + LRK54_RS06035 0.62 +0.8
1,301,277 + LRK54_RS06035 0.62 +1.3
1,301,277 + LRK54_RS06035 0.62 +1.7
1,301,277 + LRK54_RS06035 0.62 +0.5
1,301,277 + LRK54_RS06035 0.62 +1.0
1,301,278 - LRK54_RS06035 0.62 -0.1
1,301,278 - LRK54_RS06035 0.62 -1.2
1,301,278 - LRK54_RS06035 0.62 +0.1
1,301,278 - LRK54_RS06035 0.62 +0.7
1,301,404 + LRK54_RS06035 0.73 -1.5
1,301,404 + LRK54_RS06035 0.73 -0.9
1,301,404 + LRK54_RS06035 0.73 +0.1
1,301,404 + LRK54_RS06035 0.73 +0.7
1,301,404 + LRK54_RS06035 0.73 +0.4
1,301,405 - LRK54_RS06035 0.73 +1.1
1,301,839 + LRK54_RS06040 0.42 +0.6
1,301,839 + LRK54_RS06040 0.42 +1.8
1,301,839 + LRK54_RS06040 0.42 +0.6
1,301,840 - LRK54_RS06040 0.43 +0.5
1,301,840 - LRK54_RS06040 0.43 +0.1
1,301,840 - LRK54_RS06040 0.43 -1.0
1,301,840 - LRK54_RS06040 0.43 -0.2
1,301,938 + LRK54_RS06040 0.73 +0.2
1,301,938 + LRK54_RS06040 0.73 +0.1
1,301,938 + LRK54_RS06040 0.73 -0.3
1,301,938 + LRK54_RS06040 0.73 -2.8
1,301,938 + LRK54_RS06040 0.73 +0.0
1,301,938 + LRK54_RS06040 0.73 -0.1
1,301,939 - LRK54_RS06040 0.74 +0.1
1,301,939 - LRK54_RS06040 0.74 +1.8
1,301,939 - LRK54_RS06040 0.74 -1.7
1,301,978 + LRK54_RS06040 0.86 +0.7
1,301,978 + LRK54_RS06040 0.86 -0.9
1,301,979 - LRK54_RS06040 0.86 -0.7
1,301,979 - LRK54_RS06040 0.86 +0.6
1,302,099 + LRK54_RS06045 0.12 -0.1
1,302,099 + LRK54_RS06045 0.12 -0.4
1,302,099 + LRK54_RS06045 0.12 -0.6
1,302,099 + LRK54_RS06045 0.12 +0.4
1,302,099 + LRK54_RS06045 0.12 +2.2
1,302,099 + LRK54_RS06045 0.12 +1.2
1,302,099 + LRK54_RS06045 0.12 -0.3
1,302,100 - LRK54_RS06045 0.12 -0.2
1,302,100 - LRK54_RS06045 0.12 -0.3
1,302,100 - LRK54_RS06045 0.12 +1.8
1,302,100 - LRK54_RS06045 0.12 +1.0
1,302,100 - LRK54_RS06045 0.12 +0.4
1,302,100 - LRK54_RS06045 0.12 -2.0
1,302,100 - LRK54_RS06045 0.12 +0.3
1,302,100 - LRK54_RS06045 0.12 -0.2
1,302,100 - LRK54_RS06045 0.12 -0.2
1,302,100 - LRK54_RS06045 0.12 +2.8
1,302,100 - LRK54_RS06045 0.12 -0.3
1,302,100 - LRK54_RS06045 0.12 -0.5
1,302,363 + LRK54_RS06045 0.52 +0.8
1,302,364 - LRK54_RS06045 0.52 +0.5
1,302,582 + LRK54_RS06045 0.85 -0.7
1,302,582 + LRK54_RS06045 0.85 -0.5
1,302,582 + LRK54_RS06045 0.85 -0.5
1,302,582 + LRK54_RS06045 0.85 +0.4
1,302,582 + LRK54_RS06045 0.85 +0.5
1,302,582 + LRK54_RS06045 0.85 -0.1
1,302,582 + LRK54_RS06045 0.85 -0.2
1,302,582 + LRK54_RS06045 0.85 +0.7
1,302,582 + LRK54_RS06045 0.85 -0.3
1,302,583 - LRK54_RS06045 0.85 +0.3
1,302,583 - LRK54_RS06045 0.85 +0.4
1,302,583 - LRK54_RS06045 0.85 +0.6
1,302,583 - LRK54_RS06045 0.85 +0.5
1,302,583 - LRK54_RS06045 0.85 -0.0
1,302,583 - LRK54_RS06045 0.85 -0.2
1,302,583 - LRK54_RS06045 0.85 +0.3
1,302,583 - LRK54_RS06045 0.85 +0.4

Or see this region's nucleotide sequence