Strain Fitness in Rhodanobacter denitrificans FW104-10B01 around LRK54_RS05220

Experiment: R2A control

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	R2A control
1,118,731	+		LRK54_RS05215	0.13	-0.7
1,118,794	+		LRK54_RS05215	0.19	-2.3
1,118,794	+		LRK54_RS05215	0.19	+0.9
1,118,794	+		LRK54_RS05215	0.19	+0.7
1,118,794	+		LRK54_RS05215	0.19	-0.5
1,118,794	+		LRK54_RS05215	0.19	+0.8
1,118,795	-		LRK54_RS05215	0.19	+0.6
1,118,795	-		LRK54_RS05215	0.19	-0.8
1,118,795	-		LRK54_RS05215	0.19	+1.6
1,118,795	-		LRK54_RS05215	0.19	+0.1
1,118,795	-		LRK54_RS05215	0.19	-1.4
1,118,795	-		LRK54_RS05215	0.19	-0.3
1,118,885	+		LRK54_RS05215	0.28	+0.3
1,118,885	+		LRK54_RS05215	0.28	-1.8
1,118,885	+		LRK54_RS05215	0.28	-2.2
1,118,886	-		LRK54_RS05215	0.29	-0.7
1,118,886	-		LRK54_RS05215	0.29	+0.9
1,119,034	+		LRK54_RS05215	0.44	-0.1
1,119,034	+		LRK54_RS05215	0.44	-0.1
1,119,034	+		LRK54_RS05215	0.44	-0.1
1,119,034	+		LRK54_RS05215	0.44	+0.9
1,119,034	+		LRK54_RS05215	0.44	-0.4
1,119,034	+		LRK54_RS05215	0.44	+2.2
1,119,034	+		LRK54_RS05215	0.44	+1.2
1,119,034	+		LRK54_RS05215	0.44	-0.9
1,119,034	+		LRK54_RS05215	0.44	-2.2
1,119,034	+		LRK54_RS05215	0.44	-0.3
1,119,035	-		LRK54_RS05215	0.44	+0.5
1,119,035	-		LRK54_RS05215	0.44	+0.3
1,119,035	-		LRK54_RS05215	0.44	-0.6
1,119,035	-		LRK54_RS05215	0.44	+1.3
1,119,035	-		LRK54_RS05215	0.44	+1.1
1,119,035	-		LRK54_RS05215	0.44	-2.3
1,119,035	-		LRK54_RS05215	0.44	+0.5
1,119,035	-		LRK54_RS05215	0.44	+0.2
1,119,035	-		LRK54_RS05215	0.44	-0.4
1,119,035	-		LRK54_RS05215	0.44	-1.0
1,119,035	-		LRK54_RS05215	0.44	+0.5
1,119,035	-		LRK54_RS05215	0.44	+1.3
1,119,035	-		LRK54_RS05215	0.44	+0.3
1,119,127	+		LRK54_RS05215	0.53	+0.1
1,119,128	-		LRK54_RS05215	0.53	+1.1
1,119,128	-		LRK54_RS05215	0.53	-1.1
1,119,371	-		LRK54_RS05215	0.78	-0.5
1,119,388	+		LRK54_RS05215	0.80	+0.1
1,119,388	+		LRK54_RS05215	0.80	+0.9
1,119,388	+		LRK54_RS05215	0.80	+1.9
1,119,388	+		LRK54_RS05215	0.80	-0.4
1,119,389	-		LRK54_RS05215	0.80	+1.2
1,119,389	-		LRK54_RS05215	0.80	-0.8
1,119,389	-		LRK54_RS05215	0.80	+0.9
1,119,389	-		LRK54_RS05215	0.80	-0.6
1,119,562	+				+0.3
1,119,563	-				+0.9
1,119,563	-				+1.9
1,119,563	-				+1.1
1,119,563	-				-0.9
1,119,688	+				-0.5
1,119,689	-				-0.9
1,119,689	-				+0.9
1,119,689	-				+1.3
1,119,871	+		LRK54_RS05220	0.15	-1.6
1,119,871	+		LRK54_RS05220	0.15	-0.4
1,119,872	-		LRK54_RS05220	0.15	-0.6
1,119,872	-		LRK54_RS05220	0.15	-0.6
1,119,872	-		LRK54_RS05220	0.15	-1.5
1,120,141	+		LRK54_RS05220	0.38	+0.3
1,120,141	+		LRK54_RS05220	0.38	-1.8
1,120,141	+		LRK54_RS05220	0.38	-2.1
1,120,141	+		LRK54_RS05220	0.38	-1.7
1,120,141	+		LRK54_RS05220	0.38	-0.9
1,120,141	+		LRK54_RS05220	0.38	-0.4
1,120,141	+		LRK54_RS05220	0.38	+0.4
1,120,141	+		LRK54_RS05220	0.38	-0.3
1,120,141	+		LRK54_RS05220	0.38	+0.0
1,120,141	+		LRK54_RS05220	0.38	-0.2
1,120,141	+		LRK54_RS05220	0.38	-2.2
1,120,141	+		LRK54_RS05220	0.38	-1.3
1,120,142	-		LRK54_RS05220	0.38	-0.4
1,120,142	-		LRK54_RS05220	0.38	-1.3
1,120,142	-		LRK54_RS05220	0.38	+0.0
1,120,142	-		LRK54_RS05220	0.38	+0.7
1,120,142	-		LRK54_RS05220	0.38	-2.0
1,120,142	-		LRK54_RS05220	0.38	-2.1
1,120,142	-		LRK54_RS05220	0.38	-1.1
1,120,142	-		LRK54_RS05220	0.38	-1.0
1,120,142	-		LRK54_RS05220	0.38	-0.3
1,120,142	-		LRK54_RS05220	0.38	-1.4
1,120,142	-		LRK54_RS05220	0.38	-0.7
1,120,142	-		LRK54_RS05220	0.38	-1.4
1,120,143	-		LRK54_RS05220	0.38	-1.0
1,120,726	+		LRK54_RS05220	0.86	-0.2
1,120,727	-		LRK54_RS05220	0.86	+1.9
1,120,783	+				-0.4
1,120,783	+				-0.1
1,120,783	+				+0.3
1,120,784	-				-0.7
1,120,784	-				+0.6
1,120,925	+				-0.1
1,120,925	+				+0.6
1,120,925	+				-1.7
1,120,925	+				-1.1
1,120,925	+				+0.9
1,120,925	+				-1.3
1,120,925	+				+0.3
1,120,925	+				-0.8
1,120,925	+				-2.4
1,120,925	+				-0.9
1,120,925	+				-0.2
1,120,926	-				+2.6
1,120,926	-				-2.3
1,120,926	-				-0.1
1,120,926	-				-0.0
1,120,926	-				-0.7
1,120,926	-				-0.8
1,120,926	-				-3.1
1,120,926	-				+1.6
1,120,926	-				-1.1
1,120,926	-				-1.1
1,120,927	+				+0.1
1,120,927	+				+0.4
1,120,927	+				+1.5
1,120,927	+				-0.3
1,120,927	+				-1.4
1,120,927	+				+0.9
1,120,927	+				+0.2
1,120,927	+				+0.9
1,120,927	+				-1.1
1,120,927	+				-1.6
1,120,927	+				+0.9
1,120,927	+				+0.2
1,120,928	-				+0.1
1,120,928	-				+1.5
1,120,928	-				-0.8
1,120,928	-				-0.8
1,120,928	-				-0.4
1,120,928	-				+0.3
1,120,928	-				-0.2
1,120,928	-				+0.7
1,120,928	-				-1.9
1,120,928	-				-0.4
1,120,928	-				-1.3
1,120,928	-				-3.0
1,120,928	-				-0.9
1,120,928	-				-0.1
1,120,987	+				+1.5
1,120,987	+				+0.3
1,120,987	+				+1.3
1,120,987	+				-1.1
1,120,987	+				+0.3
1,120,987	+				+0.1
1,120,987	+				+0.5
1,120,988	-				+0.0
1,120,988	-				+0.3
1,120,988	-				+0.9
1,120,988	-				-0.1
1,120,988	-				-1.3
1,120,989	+				-1.3
1,120,989	+				-1.1
1,120,989	+				-2.1
1,120,989	+				-1.4
1,120,989	+				-0.8
1,120,989	+				-1.3
1,120,989	+				+0.1
1,120,989	+				-1.6
1,120,989	+				+0.3
1,120,989	+				-0.3
1,120,989	+				+0.6
1,120,989	+				+1.9
1,120,990	-				-1.6
1,120,990	-				-2.8
1,120,990	-				+0.3
1,120,990	-				-1.4
1,120,990	-				-3.1
1,120,990	-				-0.9
1,120,990	-				-2.1
1,120,990	-				+0.6
1,120,990	-				-0.4
1,120,990	-				-0.9
1,121,000	+				-1.2
1,121,000	+				+1.6
1,121,001	-				+1.5