Strain Fitness in Rhodanobacter denitrificans FW104-10B01 around LRK54_RS02580

Experiment: R2A control

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntLRK54_RS02575 and LRK54_RS02580 are separated by 30 nucleotidesLRK54_RS02580 and LRK54_RS02585 overlap by 4 nucleotidesLRK54_RS02585 and LRK54_RS02590 are separated by 84 nucleotidesLRK54_RS02590 and LRK54_RS02595 are separated by 188 nucleotides LRK54_RS02575: LRK54_RS02575 - aldehyde dehydrogenase, at 554,711 to 556,198 _RS02575 LRK54_RS02580: LRK54_RS02580 - carbonate dehydratase, at 556,229 to 556,894 _RS02580 LRK54_RS02585: LRK54_RS02585 - Rid family hydrolase, at 556,891 to 557,322 _RS02585 LRK54_RS02590: LRK54_RS02590 - hypothetical protein, at 557,407 to 557,664 _RS02590 LRK54_RS02595: LRK54_RS02595 - N-formylglutamate deformylase, at 557,853 to 558,632 _RS02595 Position (kb) 556 557Strain fitness (log2 ratio) -2 -1 0 1 2 3at 555.352 kb on + strand, within LRK54_RS02575at 555.352 kb on + strand, within LRK54_RS02575at 555.353 kb on - strand, within LRK54_RS02575at 555.353 kb on - strand, within LRK54_RS02575at 555.617 kb on + strand, within LRK54_RS02575at 555.617 kb on + strand, within LRK54_RS02575at 555.617 kb on + strand, within LRK54_RS02575at 555.617 kb on + strand, within LRK54_RS02575at 555.617 kb on + strand, within LRK54_RS02575at 555.617 kb on + strand, within LRK54_RS02575at 555.617 kb on + strand, within LRK54_RS02575at 555.617 kb on + strand, within LRK54_RS02575at 555.617 kb on + strand, within LRK54_RS02575at 555.617 kb on + strand, within LRK54_RS02575at 555.618 kb on - strand, within LRK54_RS02575at 555.618 kb on - strand, within LRK54_RS02575at 555.618 kb on - strand, within LRK54_RS02575at 555.618 kb on - strand, within LRK54_RS02575at 555.618 kb on - strand, within LRK54_RS02575at 555.618 kb on - strand, within LRK54_RS02575at 555.618 kb on - strand, within LRK54_RS02575at 555.638 kb on + strand, within LRK54_RS02575at 555.638 kb on + strand, within LRK54_RS02575at 555.638 kb on + strand, within LRK54_RS02575at 555.638 kb on + strand, within LRK54_RS02575at 555.638 kb on + strand, within LRK54_RS02575at 555.638 kb on + strand, within LRK54_RS02575at 555.638 kb on + strand, within LRK54_RS02575at 555.639 kb on - strand, within LRK54_RS02575at 555.639 kb on - strand, within LRK54_RS02575at 555.639 kb on - strand, within LRK54_RS02575at 555.722 kb on + strand, within LRK54_RS02575at 555.722 kb on + strand, within LRK54_RS02575at 555.722 kb on + strand, within LRK54_RS02575at 555.722 kb on + strand, within LRK54_RS02575at 555.722 kb on + strand, within LRK54_RS02575at 555.722 kb on + strand, within LRK54_RS02575at 555.722 kb on + strand, within LRK54_RS02575at 555.723 kb on - strand, within LRK54_RS02575at 555.723 kb on - strand, within LRK54_RS02575at 555.723 kb on - strand, within LRK54_RS02575at 556.172 kb on + strandat 556.172 kb on + strandat 556.173 kb on - strandat 556.173 kb on - strandat 556.173 kb on - strandat 556.173 kb on - strandat 556.173 kb on - strandat 556.197 kb on - strandat 557.059 kb on + strand, within LRK54_RS02585at 557.060 kb on - strand, within LRK54_RS02585at 557.191 kb on + strand, within LRK54_RS02585at 557.191 kb on + strand, within LRK54_RS02585at 557.191 kb on + strand, within LRK54_RS02585at 557.191 kb on + strand, within LRK54_RS02585at 557.191 kb on + strand, within LRK54_RS02585at 557.191 kb on + strand, within LRK54_RS02585at 557.191 kb on + strand, within LRK54_RS02585at 557.192 kb on - strand, within LRK54_RS02585at 557.192 kb on - strand, within LRK54_RS02585at 557.192 kb on - strand, within LRK54_RS02585at 557.192 kb on - strand, within LRK54_RS02585at 557.192 kb on - strand, within LRK54_RS02585at 557.192 kb on - strand, within LRK54_RS02585at 557.192 kb on - strand, within LRK54_RS02585at 557.192 kb on - strand, within LRK54_RS02585at 557.192 kb on - strand, within LRK54_RS02585at 557.192 kb on - strand, within LRK54_RS02585at 557.203 kb on + strand, within LRK54_RS02585at 557.203 kb on + strand, within LRK54_RS02585at 557.203 kb on + strand, within LRK54_RS02585at 557.204 kb on - strand, within LRK54_RS02585at 557.204 kb on - strand, within LRK54_RS02585at 557.204 kb on - strand, within LRK54_RS02585at 557.204 kb on - strand, within LRK54_RS02585at 557.204 kb on - strand, within LRK54_RS02585at 557.204 kb on - strand, within LRK54_RS02585at 557.212 kb on + strand, within LRK54_RS02585at 557.212 kb on + strand, within LRK54_RS02585at 557.212 kb on + strand, within LRK54_RS02585at 557.212 kb on + strand, within LRK54_RS02585at 557.212 kb on + strand, within LRK54_RS02585at 557.212 kb on + strand, within LRK54_RS02585at 557.212 kb on + strand, within LRK54_RS02585at 557.213 kb on - strand, within LRK54_RS02585at 557.213 kb on - strand, within LRK54_RS02585at 557.213 kb on - strand, within LRK54_RS02585at 557.397 kb on + strandat 557.397 kb on + strandat 557.397 kb on + strandat 557.397 kb on + strandat 557.397 kb on + strandat 557.397 kb on + strandat 557.397 kb on + strandat 557.397 kb on + strandat 557.398 kb on - strandat 557.398 kb on - strandat 557.398 kb on - strandat 557.398 kb on - strandat 557.655 kb on + strandat 557.655 kb on + strandat 557.655 kb on + strandat 557.655 kb on + strandat 557.655 kb on + strandat 557.655 kb on + strandat 557.655 kb on + strandat 557.655 kb on + strandat 557.655 kb on + strandat 557.656 kb on - strandat 557.690 kb on + strandat 557.690 kb on + strandat 557.690 kb on + strandat 557.690 kb on + strandat 557.690 kb on + strandat 557.690 kb on + strandat 557.691 kb on - strandat 557.691 kb on - strandat 557.759 kb on + strandat 557.759 kb on + strandat 557.759 kb on + strandat 557.759 kb on + strandat 557.759 kb on + strandat 557.759 kb on + strandat 557.759 kb on + strandat 557.759 kb on + strandat 557.760 kb on - strandat 557.760 kb on - strandat 557.760 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction R2A control
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555,352 + LRK54_RS02575 0.43 -0.6
555,352 + LRK54_RS02575 0.43 +0.1
555,353 - LRK54_RS02575 0.43 -0.7
555,353 - LRK54_RS02575 0.43 +0.3
555,617 + LRK54_RS02575 0.61 +0.5
555,617 + LRK54_RS02575 0.61 +0.7
555,617 + LRK54_RS02575 0.61 +0.4
555,617 + LRK54_RS02575 0.61 -0.5
555,617 + LRK54_RS02575 0.61 -1.5
555,617 + LRK54_RS02575 0.61 +0.2
555,617 + LRK54_RS02575 0.61 -0.1
555,617 + LRK54_RS02575 0.61 +1.3
555,617 + LRK54_RS02575 0.61 -0.7
555,617 + LRK54_RS02575 0.61 -0.3
555,618 - LRK54_RS02575 0.61 -1.4
555,618 - LRK54_RS02575 0.61 -0.4
555,618 - LRK54_RS02575 0.61 -0.1
555,618 - LRK54_RS02575 0.61 +1.9
555,618 - LRK54_RS02575 0.61 -1.3
555,618 - LRK54_RS02575 0.61 +0.5
555,618 - LRK54_RS02575 0.61 -0.3
555,638 + LRK54_RS02575 0.62 +0.3
555,638 + LRK54_RS02575 0.62 -0.6
555,638 + LRK54_RS02575 0.62 -0.4
555,638 + LRK54_RS02575 0.62 +0.6
555,638 + LRK54_RS02575 0.62 -0.1
555,638 + LRK54_RS02575 0.62 -0.4
555,638 + LRK54_RS02575 0.62 -0.4
555,639 - LRK54_RS02575 0.62 -0.1
555,639 - LRK54_RS02575 0.62 -1.3
555,639 - LRK54_RS02575 0.62 +0.6
555,722 + LRK54_RS02575 0.68 -0.5
555,722 + LRK54_RS02575 0.68 -0.2
555,722 + LRK54_RS02575 0.68 +0.0
555,722 + LRK54_RS02575 0.68 +0.0
555,722 + LRK54_RS02575 0.68 -1.1
555,722 + LRK54_RS02575 0.68 +0.5
555,722 + LRK54_RS02575 0.68 +0.6
555,723 - LRK54_RS02575 0.68 -2.1
555,723 - LRK54_RS02575 0.68 -1.2
555,723 - LRK54_RS02575 0.68 +0.1
556,172 + -0.2
556,172 + -0.5
556,173 - -1.3
556,173 - -1.1
556,173 - -0.9
556,173 - -0.1
556,173 - -0.8
556,197 - -0.4
557,059 + LRK54_RS02585 0.39 +0.3
557,060 - LRK54_RS02585 0.39 +0.3
557,191 + LRK54_RS02585 0.69 -0.4
557,191 + LRK54_RS02585 0.69 -0.1
557,191 + LRK54_RS02585 0.69 -0.5
557,191 + LRK54_RS02585 0.69 +1.9
557,191 + LRK54_RS02585 0.69 -0.1
557,191 + LRK54_RS02585 0.69 -1.2
557,191 + LRK54_RS02585 0.69 +0.9
557,192 - LRK54_RS02585 0.70 +0.0
557,192 - LRK54_RS02585 0.70 -0.1
557,192 - LRK54_RS02585 0.70 -0.9
557,192 - LRK54_RS02585 0.70 +0.3
557,192 - LRK54_RS02585 0.70 -0.9
557,192 - LRK54_RS02585 0.70 +1.1
557,192 - LRK54_RS02585 0.70 -1.4
557,192 - LRK54_RS02585 0.70 -2.6
557,192 - LRK54_RS02585 0.70 -1.2
557,192 - LRK54_RS02585 0.70 -0.8
557,203 + LRK54_RS02585 0.72 -0.3
557,203 + LRK54_RS02585 0.72 +0.4
557,203 + LRK54_RS02585 0.72 -0.1
557,204 - LRK54_RS02585 0.72 +0.2
557,204 - LRK54_RS02585 0.72 +0.7
557,204 - LRK54_RS02585 0.72 -0.6
557,204 - LRK54_RS02585 0.72 -1.4
557,204 - LRK54_RS02585 0.72 -0.2
557,204 - LRK54_RS02585 0.72 +0.3
557,212 + LRK54_RS02585 0.74 -0.8
557,212 + LRK54_RS02585 0.74 -1.4
557,212 + LRK54_RS02585 0.74 +2.9
557,212 + LRK54_RS02585 0.74 +1.0
557,212 + LRK54_RS02585 0.74 -1.0
557,212 + LRK54_RS02585 0.74 -0.4
557,212 + LRK54_RS02585 0.74 -0.6
557,213 - LRK54_RS02585 0.75 +1.4
557,213 - LRK54_RS02585 0.75 +1.9
557,213 - LRK54_RS02585 0.75 +0.5
557,397 + -0.6
557,397 + +0.6
557,397 + -0.4
557,397 + +1.5
557,397 + -0.7
557,397 + +1.4
557,397 + +2.9
557,397 + -0.2
557,398 - +0.5
557,398 - +0.4
557,398 - -0.2
557,398 - -0.4
557,655 + -2.1
557,655 + -1.1
557,655 + -0.4
557,655 + -0.3
557,655 + -0.4
557,655 + +1.3
557,655 + -0.3
557,655 + -0.3
557,655 + +0.5
557,656 - +1.7
557,690 + -0.1
557,690 + -0.3
557,690 + +0.3
557,690 + -0.7
557,690 + +1.9
557,690 + -0.7
557,691 - -1.0
557,691 - -0.3
557,759 + +0.1
557,759 + +0.5
557,759 + +0.3
557,759 + +0.6
557,759 + -0.7
557,759 + -0.4
557,759 + -0.6
557,759 + +1.3
557,760 - -0.2
557,760 - -0.0
557,760 - +0.2

Or see this region's nucleotide sequence