Strain Fitness in Pantoea sp. MT58 around IAI47_05360

Experiment: nitrogen source nitrate 5mM

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	nitrogen source nitrate 5mM
1,135,360	-		IAI47_05355	0.32	-1.3
1,135,378	-		IAI47_05355	0.34	-1.3
1,135,378	-		IAI47_05355	0.34	+0.6
1,135,383	+		IAI47_05355	0.34	-0.9
1,135,384	-		IAI47_05355	0.34	-0.3
1,135,428	+		IAI47_05355	0.39	+0.9
1,135,428	+		IAI47_05355	0.39	+0.1
1,135,428	+		IAI47_05355	0.39	-0.8
1,135,428	+		IAI47_05355	0.39	+0.7
1,135,428	+		IAI47_05355	0.39	-1.1
1,135,428	+		IAI47_05355	0.39	-2.7
1,135,429	-		IAI47_05355	0.39	+1.5
1,135,429	-		IAI47_05355	0.39	+0.1
1,135,429	-		IAI47_05355	0.39	+0.0
1,135,429	-		IAI47_05355	0.39	+1.3
1,135,429	-		IAI47_05355	0.39	+1.0
1,135,429	-		IAI47_05355	0.39	+0.5
1,135,429	-		IAI47_05355	0.39	-2.2
1,135,429	-		IAI47_05355	0.39	+1.9
1,135,455	+		IAI47_05355	0.42	+0.8
1,135,455	+		IAI47_05355	0.42	+0.6
1,135,455	+		IAI47_05355	0.42	-0.5
1,135,455	+		IAI47_05355	0.42	+1.0
1,135,456	-		IAI47_05355	0.42	+3.5
1,135,456	-		IAI47_05355	0.42	-0.5
1,135,456	-		IAI47_05355	0.42	+0.9
1,135,456	-		IAI47_05355	0.42	+2.0
1,135,456	-		IAI47_05355	0.42	-1.1
1,135,464	+		IAI47_05355	0.43	-1.3
1,135,464	+		IAI47_05355	0.43	-0.1
1,135,464	+		IAI47_05355	0.43	-0.7
1,135,464	+		IAI47_05355	0.43	+0.2
1,135,464	+		IAI47_05355	0.43	-2.5
1,135,464	+		IAI47_05355	0.43	-0.3
1,135,464	+		IAI47_05355	0.43	+2.2
1,135,465	-		IAI47_05355	0.43	+0.7
1,135,465	-		IAI47_05355	0.43	-1.4
1,135,465	-		IAI47_05355	0.43	-0.2
1,135,465	-		IAI47_05355	0.43	-1.1
1,135,465	-		IAI47_05355	0.43	+0.0
1,135,558	+		IAI47_05355	0.53	+0.1
1,135,558	+		IAI47_05355	0.53	+0.0
1,135,558	+		IAI47_05355	0.53	+1.5
1,135,558	+		IAI47_05355	0.53	+0.3
1,135,559	-		IAI47_05355	0.53	+0.2
1,135,559	-		IAI47_05355	0.53	-1.6
1,135,559	-		IAI47_05355	0.53	+2.2
1,135,594	+		IAI47_05355	0.56	-0.4
1,135,594	+		IAI47_05355	0.56	+1.3
1,135,595	-		IAI47_05355	0.56	-1.0
1,135,595	-		IAI47_05355	0.56	+2.5
1,135,595	-		IAI47_05355	0.56	-0.7
1,135,618	+		IAI47_05355	0.59	-0.1
1,135,618	+		IAI47_05355	0.59	+0.4
1,135,618	+		IAI47_05355	0.59	+1.4
1,135,656	+		IAI47_05355	0.63	-0.4
1,135,656	+		IAI47_05355	0.63	-0.1
1,135,656	+		IAI47_05355	0.63	-0.0
1,135,656	+		IAI47_05355	0.63	+0.2
1,135,656	+		IAI47_05355	0.63	+0.7
1,135,656	+		IAI47_05355	0.63	+1.8
1,135,656	+		IAI47_05355	0.63	+3.0
1,135,657	-		IAI47_05355	0.63	+0.5
1,135,657	-		IAI47_05355	0.63	+0.0
1,135,657	-		IAI47_05355	0.63	-0.5
1,135,657	-		IAI47_05355	0.63	+1.7
1,135,657	-		IAI47_05355	0.63	-0.1
1,135,657	-		IAI47_05355	0.63	-1.3
1,135,657	-		IAI47_05355	0.63	-1.9
1,135,657	-		IAI47_05355	0.63	+0.4
1,135,657	-		IAI47_05355	0.63	+0.0
1,135,657	-		IAI47_05355	0.63	+1.3
1,135,746	-		IAI47_05355	0.72	+1.1
1,135,798	+		IAI47_05355	0.78	+0.2
1,135,801	+		IAI47_05355	0.78	+2.9
1,135,801	+		IAI47_05355	0.78	+1.9
1,135,802	-		IAI47_05355	0.78	-0.5
1,135,839	+		IAI47_05355	0.82	+0.7
1,135,839	+		IAI47_05355	0.82	+0.3
1,135,867	+		IAI47_05355	0.85	-2.8
1,135,868	-		IAI47_05355	0.85	+1.7
1,135,868	-		IAI47_05355	0.85	-0.0
1,135,868	-		IAI47_05355	0.85	+0.1
1,135,868	-		IAI47_05355	0.85	+0.9
1,135,868	-		IAI47_05355	0.85	-1.1
1,135,868	-		IAI47_05355	0.85	-1.0
1,135,868	-		IAI47_05355	0.85	-1.0
1,135,868	-		IAI47_05355	0.85	-0.1
1,135,869	+		IAI47_05355	0.85	+1.8
1,135,869	+		IAI47_05355	0.85	+0.6
1,135,870	-		IAI47_05355	0.85	+0.1
1,135,870	-		IAI47_05355	0.85	+1.3
1,135,870	-		IAI47_05355	0.85	-1.5
1,135,870	-		IAI47_05355	0.85	+0.3
1,135,870	-		IAI47_05355	0.85	+0.9
1,135,915	+				+1.6
1,135,916	-				-2.4
1,135,932	+				-0.3
1,135,932	+				+1.2
1,135,933	-				-0.1
1,135,933	-				-0.3
1,135,933	-				-1.3
1,135,936	+				+1.7
1,135,936	+				+1.2
1,135,936	+				-1.1
1,135,937	-				-0.1
1,135,937	-				+0.1
1,135,988	+				-1.1
1,135,989	-				+0.6
1,135,997	+				+0.3
1,135,997	+				-3.8
1,135,998	-				+1.1
1,135,998	-				-0.4
1,136,013	-				+2.9
1,136,107	+				+0.3
1,136,108	-				+1.7
1,136,108	-				+1.5
1,136,108	-				+1.3
1,136,214	-				+1.4
1,136,224	+				-0.2
1,136,224	+				-0.5
1,136,224	+				-0.5
1,136,224	+				+0.7
1,136,224	+				-0.9
1,136,225	-				+1.1
1,136,225	-				+0.8
1,136,225	-				+0.4
1,136,225	-				+1.4
1,136,230	+				-1.8
1,136,230	+				+0.8
1,136,230	+				-0.2
1,136,230	+				+0.0
1,136,231	-				-0.3
1,136,263	+				-1.0
1,136,263	+				-0.7
1,136,263	+				+0.2
1,136,263	+				+0.8
1,136,263	+				+3.9
1,136,263	+				+0.2
1,136,264	-				-0.3
1,136,264	-				-2.0
1,136,291	-				-1.5
1,136,291	-				+0.3
1,136,310	+				-0.7
1,136,310	+				+1.7
1,136,310	+				+1.7
1,136,311	-				-0.4
1,136,311	-				+0.7
1,136,311	-				-0.1
1,136,311	-				-1.1
1,136,311	-				+0.4
1,136,311	-				+0.7
1,136,311	-				-1.6
1,137,308	-				+0.8
1,137,308	-				+1.9
1,137,308	-				+0.0
1,137,308	-				+0.7
1,137,335	-				-1.1
1,137,335	-				+0.9
1,137,335	-				-1.3
1,137,335	-				+1.2
1,137,335	-				+0.1
1,137,353	+				+0.3
1,137,353	+				-0.1
1,137,353	+				+0.5
1,137,354	-				-0.2
1,137,354	-				+2.7
1,137,363	-				+0.7
1,137,401	+				-0.8
1,137,402	-				-0.9
1,137,464	-		IAI47_05365	0.11	+2.0
1,137,486	+		IAI47_05365	0.14	+1.9
1,137,486	+		IAI47_05365	0.14	-1.7
1,137,489	+		IAI47_05365	0.14	+1.0
1,137,489	+		IAI47_05365	0.14	+1.9
1,137,490	-		IAI47_05365	0.14	-0.2
1,137,490	-		IAI47_05365	0.14	-2.7
1,137,490	-		IAI47_05365	0.14	+0.9
1,137,536	-		IAI47_05365	0.20	+2.5
1,137,536	-		IAI47_05365	0.20	-1.7
1,137,568	-		IAI47_05365	0.23	-0.3
1,137,674	+		IAI47_05365	0.36	+1.1
1,137,674	+		IAI47_05365	0.36	+0.8
1,137,674	+		IAI47_05365	0.36	+0.7
1,137,674	+		IAI47_05365	0.36	-0.7
1,137,674	+		IAI47_05365	0.36	+0.7
1,137,674	+		IAI47_05365	0.36	-0.1
1,137,674	+		IAI47_05365	0.36	-0.4
1,137,675	-		IAI47_05365	0.36	-0.0
1,137,675	-		IAI47_05365	0.36	+0.1
1,137,675	-		IAI47_05365	0.36	-0.4
1,137,740	+		IAI47_05365	0.44	-0.1
1,137,784	+		IAI47_05365	0.49	-1.8
1,137,785	-		IAI47_05365	0.49	-0.3
1,137,785	-		IAI47_05365	0.49	-0.2
1,137,785	-		IAI47_05365	0.49	-0.1
1,137,813	+		IAI47_05365	0.52	+0.1
1,137,814	-		IAI47_05365	0.52	+0.7
1,137,814	-		IAI47_05365	0.52	+0.0
1,137,837	+		IAI47_05365	0.55	-1.3
1,137,838	-		IAI47_05365	0.55	+0.8
1,137,838	-		IAI47_05365	0.55	-0.9
1,137,838	-		IAI47_05365	0.55	+1.1
1,137,838	-		IAI47_05365	0.55	+0.9
1,137,881	+		IAI47_05365	0.60	+0.2
1,137,882	-		IAI47_05365	0.61	+1.2
1,138,092	+		IAI47_05365	0.85	-1.6
1,138,092	+		IAI47_05365	0.85	-0.1
1,138,092	+		IAI47_05365	0.85	+1.3
1,138,093	-		IAI47_05365	0.85	+0.0
1,138,093	-		IAI47_05365	0.85	+0.8
1,138,147	+				+1.1
1,138,177	+				+0.5
1,138,177	+				-1.0
1,138,177	+				-0.1
1,138,203	+				-1.0
1,138,204	-				-0.7
1,138,204	-				-1.3
1,138,204	-				+1.1
1,138,204	-				-0.6
1,138,204	-				+0.2
1,138,204	-				-0.5
1,138,249	+				+0.5
1,138,249	+				-0.1
1,138,250	-				+1.6
1,138,250	-				+1.3
1,138,251	+				-0.7
1,138,251	+				+0.9
1,138,251	+				+0.3
1,138,252	-				+1.5
1,138,252	-				-0.2
1,138,252	-				-1.6
1,138,252	-				+1.3
1,138,256	+				-2.0
1,138,256	+				-1.3
1,138,256	+				+0.7
1,138,256	+				+0.5
1,138,256	+				-0.3
1,138,257	-				-0.9
1,138,257	-				+1.1
1,138,257	-				-0.4
1,138,257	-				-0.4