Experiment: nitrogen source nitrate 5mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt IAI47_02965 and IAI47_02970 are separated by 569 nucleotides IAI47_02970 and IAI47_02975 overlap by 4 nucleotides
IAI47_02965: IAI47_02965 - 5'-nucleotidase, lipoprotein e(P4) family, at 612,409 to 613,218
_02965
IAI47_02970: IAI47_02970 - carbonic anhydrase, at 613,788 to 614,423
_02970
IAI47_02975: IAI47_02975 - SulP family inorganic anion transporter, at 614,420 to 615,895
_02975
Position (kb) 613
614
615 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 612.820 kb on + strand, within IAI47_02965 at 612.820 kb on + strand, within IAI47_02965 at 612.820 kb on + strand, within IAI47_02965 at 612.820 kb on + strand, within IAI47_02965 at 612.820 kb on + strand, within IAI47_02965 at 612.821 kb on - strand, within IAI47_02965 at 612.821 kb on - strand, within IAI47_02965 at 612.847 kb on + strand, within IAI47_02965 at 612.847 kb on + strand, within IAI47_02965 at 612.847 kb on + strand, within IAI47_02965 at 612.848 kb on - strand, within IAI47_02965 at 612.848 kb on - strand, within IAI47_02965 at 612.848 kb on - strand, within IAI47_02965 at 612.848 kb on - strand, within IAI47_02965 at 612.867 kb on + strand, within IAI47_02965 at 612.867 kb on + strand, within IAI47_02965 at 612.868 kb on - strand, within IAI47_02965 at 612.908 kb on + strand, within IAI47_02965 at 612.908 kb on + strand, within IAI47_02965 at 612.908 kb on + strand, within IAI47_02965 at 612.908 kb on + strand, within IAI47_02965 at 612.908 kb on + strand, within IAI47_02965 at 612.918 kb on + strand, within IAI47_02965 at 612.919 kb on - strand, within IAI47_02965 at 612.933 kb on + strand, within IAI47_02965 at 612.934 kb on - strand, within IAI47_02965 at 612.971 kb on - strand, within IAI47_02965 at 612.972 kb on + strand, within IAI47_02965 at 612.972 kb on + strand, within IAI47_02965 at 612.972 kb on + strand, within IAI47_02965 at 612.973 kb on - strand, within IAI47_02965 at 612.985 kb on + strand, within IAI47_02965 at 612.985 kb on + strand, within IAI47_02965 at 612.986 kb on - strand, within IAI47_02965 at 612.986 kb on - strand, within IAI47_02965 at 613.029 kb on + strand, within IAI47_02965 at 613.029 kb on + strand, within IAI47_02965 at 613.029 kb on + strand, within IAI47_02965 at 613.030 kb on - strand, within IAI47_02965 at 613.092 kb on + strand, within IAI47_02965 at 613.100 kb on + strand, within IAI47_02965 at 613.100 kb on + strand, within IAI47_02965 at 613.100 kb on + strand, within IAI47_02965 at 613.100 kb on + strand, within IAI47_02965 at 613.101 kb on - strand, within IAI47_02965 at 613.101 kb on - strand, within IAI47_02965 at 613.104 kb on + strand, within IAI47_02965 at 613.105 kb on - strand, within IAI47_02965 at 613.115 kb on - strand, within IAI47_02965 at 613.152 kb on + strand at 613.152 kb on + strand at 613.152 kb on + strand at 613.152 kb on + strand at 613.152 kb on + strand at 613.152 kb on + strand at 613.152 kb on + strand at 613.152 kb on + strand at 613.152 kb on + strand at 613.152 kb on + strand at 613.153 kb on - strand at 613.153 kb on - strand at 613.153 kb on - strand at 613.153 kb on - strand at 613.153 kb on - strand at 613.153 kb on - strand at 613.153 kb on - strand at 613.153 kb on - strand at 613.153 kb on - strand at 613.153 kb on - strand at 613.213 kb on - strand at 613.217 kb on - strand at 613.257 kb on + strand at 613.257 kb on + strand at 613.257 kb on + strand at 613.257 kb on + strand at 613.258 kb on - strand at 613.258 kb on - strand at 613.261 kb on - strand at 613.261 kb on - strand at 613.261 kb on - strand at 613.261 kb on - strand at 613.270 kb on + strand at 613.271 kb on - strand at 613.274 kb on + strand at 613.274 kb on + strand at 613.274 kb on + strand at 613.274 kb on + strand at 613.274 kb on + strand at 613.275 kb on - strand at 613.275 kb on - strand at 613.275 kb on - strand at 613.275 kb on - strand at 613.278 kb on + strand at 613.278 kb on + strand at 613.278 kb on + strand at 613.310 kb on + strand at 613.332 kb on + strand at 613.332 kb on + strand at 613.333 kb on - strand at 613.340 kb on + strand at 613.340 kb on + strand at 613.346 kb on + strand at 613.346 kb on + strand at 613.346 kb on + strand at 613.346 kb on + strand at 613.347 kb on - strand at 613.347 kb on - strand at 613.347 kb on - strand at 613.347 kb on - strand at 613.347 kb on - strand at 613.348 kb on + strand at 613.348 kb on + strand at 613.348 kb on + strand at 613.348 kb on + strand at 613.348 kb on + strand at 613.348 kb on + strand at 613.348 kb on + strand at 613.349 kb on - strand at 613.349 kb on - strand at 613.349 kb on - strand at 613.349 kb on - strand at 613.349 kb on - strand at 613.349 kb on - strand at 613.361 kb on + strand at 613.361 kb on + strand at 613.361 kb on + strand at 613.361 kb on + strand at 613.361 kb on + strand at 613.362 kb on - strand at 613.362 kb on - strand at 613.362 kb on - strand at 613.363 kb on + strand at 613.363 kb on + strand at 613.363 kb on + strand at 613.395 kb on + strand at 613.396 kb on - strand at 613.407 kb on + strand at 613.442 kb on - strand at 613.465 kb on + strand at 613.475 kb on - strand at 613.479 kb on - strand at 613.498 kb on - strand at 613.523 kb on + strand at 613.645 kb on + strand at 613.646 kb on - strand at 613.677 kb on - strand at 613.677 kb on - strand at 613.703 kb on + strand at 613.704 kb on - strand at 613.726 kb on + strand at 613.726 kb on + strand at 613.726 kb on + strand at 613.726 kb on + strand at 613.726 kb on + strand at 613.726 kb on + strand at 613.727 kb on - strand at 613.727 kb on - strand at 613.778 kb on + strand at 613.778 kb on + strand at 613.779 kb on - strand at 613.779 kb on - strand at 613.779 kb on - strand at 613.805 kb on + strand at 613.805 kb on + strand at 613.805 kb on + strand at 613.806 kb on - strand at 613.806 kb on - strand at 613.806 kb on - strand at 613.806 kb on - strand at 613.806 kb on - strand at 613.813 kb on + strand at 613.813 kb on + strand at 613.813 kb on + strand at 613.814 kb on - strand at 613.814 kb on - strand at 613.814 kb on - strand at 613.814 kb on - strand at 613.816 kb on + strand at 613.856 kb on + strand, within IAI47_02970 at 613.866 kb on + strand, within IAI47_02970 at 613.912 kb on + strand, within IAI47_02970 at 613.913 kb on - strand, within IAI47_02970 at 613.913 kb on - strand, within IAI47_02970 at 613.913 kb on - strand, within IAI47_02970 at 613.926 kb on - strand, within IAI47_02970 at 613.926 kb on - strand, within IAI47_02970 at 613.945 kb on + strand, within IAI47_02970 at 613.945 kb on + strand, within IAI47_02970 at 613.945 kb on + strand, within IAI47_02970 at 613.945 kb on + strand, within IAI47_02970 at 613.946 kb on - strand, within IAI47_02970 at 613.946 kb on - strand, within IAI47_02970 at 613.948 kb on + strand, within IAI47_02970 at 613.978 kb on + strand, within IAI47_02970 at 613.978 kb on + strand, within IAI47_02970 at 613.978 kb on + strand, within IAI47_02970 at 613.979 kb on - strand, within IAI47_02970 at 613.979 kb on - strand, within IAI47_02970 at 613.979 kb on - strand, within IAI47_02970 at 613.979 kb on - strand, within IAI47_02970 at 613.985 kb on + strand, within IAI47_02970 at 613.985 kb on + strand, within IAI47_02970 at 613.985 kb on + strand, within IAI47_02970 at 613.985 kb on + strand, within IAI47_02970 at 613.985 kb on + strand, within IAI47_02970 at 613.985 kb on + strand, within IAI47_02970 at 613.985 kb on + strand, within IAI47_02970 at 613.985 kb on + strand, within IAI47_02970 at 613.986 kb on - strand, within IAI47_02970 at 613.986 kb on - strand, within IAI47_02970 at 613.986 kb on - strand, within IAI47_02970 at 613.986 kb on - strand, within IAI47_02970 at 613.986 kb on - strand, within IAI47_02970 at 613.989 kb on - strand, within IAI47_02970 at 614.033 kb on - strand, within IAI47_02970 at 614.033 kb on - strand, within IAI47_02970 at 614.040 kb on + strand, within IAI47_02970 at 614.040 kb on + strand, within IAI47_02970 at 614.040 kb on + strand, within IAI47_02970 at 614.040 kb on + strand, within IAI47_02970 at 614.040 kb on + strand, within IAI47_02970 at 614.041 kb on - strand, within IAI47_02970 at 614.041 kb on - strand, within IAI47_02970 at 614.041 kb on - strand, within IAI47_02970 at 614.041 kb on - strand, within IAI47_02970 at 614.079 kb on - strand, within IAI47_02970 at 614.089 kb on - strand, within IAI47_02970 at 614.089 kb on - strand, within IAI47_02970 at 614.089 kb on - strand, within IAI47_02970 at 614.104 kb on + strand, within IAI47_02970 at 614.105 kb on - strand, within IAI47_02970 at 614.105 kb on - strand, within IAI47_02970 at 614.168 kb on + strand, within IAI47_02970 at 614.168 kb on + strand, within IAI47_02970 at 614.168 kb on + strand, within IAI47_02970 at 614.168 kb on + strand, within IAI47_02970 at 614.169 kb on - strand, within IAI47_02970 at 614.169 kb on - strand, within IAI47_02970 at 614.169 kb on - strand, within IAI47_02970 at 614.169 kb on - strand, within IAI47_02970 at 614.190 kb on - strand, within IAI47_02970 at 614.190 kb on - strand, within IAI47_02970 at 614.358 kb on + strand, within IAI47_02970 at 614.358 kb on + strand, within IAI47_02970 at 614.419 kb on + strand at 614.419 kb on + strand at 614.419 kb on + strand at 614.419 kb on + strand at 614.419 kb on + strand at 614.419 kb on + strand at 614.420 kb on - strand at 614.420 kb on - strand at 614.420 kb on - strand at 614.420 kb on - strand at 614.432 kb on - strand at 614.649 kb on + strand, within IAI47_02975 at 614.650 kb on - strand, within IAI47_02975 at 614.650 kb on - strand, within IAI47_02975 at 614.683 kb on + strand, within IAI47_02975 at 614.684 kb on - strand, within IAI47_02975 at 614.684 kb on - strand, within IAI47_02975 at 614.734 kb on + strand, within IAI47_02975 at 614.734 kb on + strand, within IAI47_02975 at 614.734 kb on + strand, within IAI47_02975 at 614.895 kb on + strand, within IAI47_02975 at 614.895 kb on + strand, within IAI47_02975 at 614.896 kb on - strand, within IAI47_02975 at 614.896 kb on - strand, within IAI47_02975 at 614.919 kb on + strand, within IAI47_02975 at 614.919 kb on + strand, within IAI47_02975 at 614.919 kb on + strand, within IAI47_02975 at 614.919 kb on + strand, within IAI47_02975 at 614.920 kb on - strand, within IAI47_02975 at 614.920 kb on - strand, within IAI47_02975 at 614.920 kb on - strand, within IAI47_02975 at 614.920 kb on - strand, within IAI47_02975 at 615.168 kb on + strand, within IAI47_02975 at 615.169 kb on - strand, within IAI47_02975 at 615.169 kb on - strand, within IAI47_02975 at 615.394 kb on - strand, within IAI47_02975 at 615.394 kb on - strand, within IAI47_02975 at 615.394 kb on - strand, within IAI47_02975 at 615.394 kb on - strand, within IAI47_02975 at 615.421 kb on + strand, within IAI47_02975 at 615.422 kb on - strand, within IAI47_02975
Per-strain Table
Position Strand Gene LocusTag Fraction nitrogen source nitrate 5mM remove 612,820 + IAI47_02965 0.51 -0.1 612,820 + IAI47_02965 0.51 +0.1 612,820 + IAI47_02965 0.51 +0.2 612,820 + IAI47_02965 0.51 -0.8 612,820 + IAI47_02965 0.51 -1.0 612,821 - IAI47_02965 0.51 +1.5 612,821 - IAI47_02965 0.51 +1.4 612,847 + IAI47_02965 0.54 +0.5 612,847 + IAI47_02965 0.54 +0.1 612,847 + IAI47_02965 0.54 +0.5 612,848 - IAI47_02965 0.54 -0.6 612,848 - IAI47_02965 0.54 -1.8 612,848 - IAI47_02965 0.54 +0.2 612,848 - IAI47_02965 0.54 +0.7 612,867 + IAI47_02965 0.57 +0.4 612,867 + IAI47_02965 0.57 +0.6 612,868 - IAI47_02965 0.57 -3.3 612,908 + IAI47_02965 0.62 +0.4 612,908 + IAI47_02965 0.62 -0.3 612,908 + IAI47_02965 0.62 -0.7 612,908 + IAI47_02965 0.62 +0.6 612,908 + IAI47_02965 0.62 -0.2 612,918 + IAI47_02965 0.63 -0.6 612,919 - IAI47_02965 0.63 -0.8 612,933 + IAI47_02965 0.65 -0.0 612,934 - IAI47_02965 0.65 -0.1 612,971 - IAI47_02965 0.69 -0.9 612,972 + IAI47_02965 0.70 +0.2 612,972 + IAI47_02965 0.70 -1.8 612,972 + IAI47_02965 0.70 -0.9 612,973 - IAI47_02965 0.70 -0.1 612,985 + IAI47_02965 0.71 -0.4 612,985 + IAI47_02965 0.71 -1.1 612,986 - IAI47_02965 0.71 +0.2 612,986 - IAI47_02965 0.71 -0.7 613,029 + IAI47_02965 0.77 -0.8 613,029 + IAI47_02965 0.77 +0.9 613,029 + IAI47_02965 0.77 +0.9 613,030 - IAI47_02965 0.77 -1.3 613,092 + IAI47_02965 0.84 +0.6 613,100 + IAI47_02965 0.85 -2.3 613,100 + IAI47_02965 0.85 +0.2 613,100 + IAI47_02965 0.85 -0.2 613,100 + IAI47_02965 0.85 -0.6 613,101 - IAI47_02965 0.85 +0.2 613,101 - IAI47_02965 0.85 +0.2 613,104 + IAI47_02965 0.86 +1.2 613,105 - IAI47_02965 0.86 -0.6 613,115 - IAI47_02965 0.87 +0.1 613,152 + -2.5 613,152 + -2.1 613,152 + +0.6 613,152 + +0.5 613,152 + -1.8 613,152 + +1.0 613,152 + -0.1 613,152 + -0.0 613,152 + -1.7 613,152 + +0.1 613,153 - -0.8 613,153 - +1.0 613,153 - +0.1 613,153 - +0.1 613,153 - +0.4 613,153 - -0.6 613,153 - +0.7 613,153 - +0.8 613,153 - +0.7 613,153 - -0.1 613,213 - +0.6 613,217 - -2.7 613,257 + +0.2 613,257 + +0.2 613,257 + -0.9 613,257 + +1.0 613,258 - -1.1 613,258 - -1.5 613,261 - +0.7 613,261 - +0.7 613,261 - +0.6 613,261 - -0.5 613,270 + +0.2 613,271 - +1.1 613,274 + -0.7 613,274 + +1.4 613,274 + -0.2 613,274 + +0.1 613,274 + -0.2 613,275 - -1.9 613,275 - +1.5 613,275 - +0.3 613,275 - +0.1 613,278 + +0.2 613,278 + +0.1 613,278 + +0.4 613,310 + +0.2 613,332 + -1.5 613,332 + +0.4 613,333 - +0.6 613,340 + +0.3 613,340 + -1.4 613,346 + -0.1 613,346 + +0.9 613,346 + -1.9 613,346 + -0.2 613,347 - +2.2 613,347 - +0.3 613,347 - -0.5 613,347 - +0.3 613,347 - +0.5 613,348 + +1.5 613,348 + +0.8 613,348 + +0.7 613,348 + +0.0 613,348 + +1.1 613,348 + +1.5 613,348 + +0.2 613,349 - +0.1 613,349 - -0.3 613,349 - +0.4 613,349 - -0.3 613,349 - +0.4 613,349 - -0.8 613,361 + +0.7 613,361 + -1.7 613,361 + +0.5 613,361 + -2.9 613,361 + -0.3 613,362 - +0.5 613,362 - -0.7 613,362 - -0.6 613,363 + -1.4 613,363 + +1.6 613,363 + -1.2 613,395 + +0.3 613,396 - -1.0 613,407 + -0.8 613,442 - +1.4 613,465 + -0.9 613,475 - +1.8 613,479 - -0.9 613,498 - -0.4 613,523 + +0.1 613,645 + +0.2 613,646 - +0.7 613,677 - +0.2 613,677 - -1.8 613,703 + -1.1 613,704 - +0.2 613,726 + +1.5 613,726 + -0.2 613,726 + +0.9 613,726 + +0.2 613,726 + +0.8 613,726 + +0.4 613,727 - -1.5 613,727 - +0.2 613,778 + -0.9 613,778 + -0.3 613,779 - -1.0 613,779 - +1.7 613,779 - -0.0 613,805 + +2.1 613,805 + +0.5 613,805 + -0.1 613,806 - -1.2 613,806 - -1.2 613,806 - -0.4 613,806 - -1.2 613,806 - +0.9 613,813 + +1.2 613,813 + +1.8 613,813 + -0.6 613,814 - -0.3 613,814 - +0.5 613,814 - +1.4 613,814 - +0.1 613,816 + +0.2 613,856 + IAI47_02970 0.11 +0.1 613,866 + IAI47_02970 0.12 +0.5 613,912 + IAI47_02970 0.19 -0.6 613,913 - IAI47_02970 0.20 +0.7 613,913 - IAI47_02970 0.20 +0.4 613,913 - IAI47_02970 0.20 -2.4 613,926 - IAI47_02970 0.22 -0.1 613,926 - IAI47_02970 0.22 +1.1 613,945 + IAI47_02970 0.25 +0.2 613,945 + IAI47_02970 0.25 +1.2 613,945 + IAI47_02970 0.25 +1.2 613,945 + IAI47_02970 0.25 +1.0 613,946 - IAI47_02970 0.25 -0.1 613,946 - IAI47_02970 0.25 -0.5 613,948 + IAI47_02970 0.25 -1.8 613,978 + IAI47_02970 0.30 -1.3 613,978 + IAI47_02970 0.30 -0.4 613,978 + IAI47_02970 0.30 -0.6 613,979 - IAI47_02970 0.30 +1.1 613,979 - IAI47_02970 0.30 +0.1 613,979 - IAI47_02970 0.30 -2.6 613,979 - IAI47_02970 0.30 -0.1 613,985 + IAI47_02970 0.31 +0.1 613,985 + IAI47_02970 0.31 -0.9 613,985 + IAI47_02970 0.31 +0.2 613,985 + IAI47_02970 0.31 -0.0 613,985 + IAI47_02970 0.31 -1.4 613,985 + IAI47_02970 0.31 -1.1 613,985 + IAI47_02970 0.31 +0.1 613,985 + IAI47_02970 0.31 -1.9 613,986 - IAI47_02970 0.31 -1.8 613,986 - IAI47_02970 0.31 +0.8 613,986 - IAI47_02970 0.31 -0.9 613,986 - IAI47_02970 0.31 -0.1 613,986 - IAI47_02970 0.31 -0.1 613,989 - IAI47_02970 0.32 +1.1 614,033 - IAI47_02970 0.39 +0.1 614,033 - IAI47_02970 0.39 +0.2 614,040 + IAI47_02970 0.40 -0.6 614,040 + IAI47_02970 0.40 +0.1 614,040 + IAI47_02970 0.40 -1.0 614,040 + IAI47_02970 0.40 -2.3 614,040 + IAI47_02970 0.40 -1.2 614,041 - IAI47_02970 0.40 +1.8 614,041 - IAI47_02970 0.40 +0.3 614,041 - IAI47_02970 0.40 +0.7 614,041 - IAI47_02970 0.40 +0.2 614,079 - IAI47_02970 0.46 -0.8 614,089 - IAI47_02970 0.47 -0.2 614,089 - IAI47_02970 0.47 +0.1 614,089 - IAI47_02970 0.47 -0.4 614,104 + IAI47_02970 0.50 -0.2 614,105 - IAI47_02970 0.50 -1.2 614,105 - IAI47_02970 0.50 +0.3 614,168 + IAI47_02970 0.60 +0.0 614,168 + IAI47_02970 0.60 +0.3 614,168 + IAI47_02970 0.60 -0.7 614,168 + IAI47_02970 0.60 -0.3 614,169 - IAI47_02970 0.60 -0.3 614,169 - IAI47_02970 0.60 -0.6 614,169 - IAI47_02970 0.60 -0.3 614,169 - IAI47_02970 0.60 +0.2 614,190 - IAI47_02970 0.63 +0.8 614,190 - IAI47_02970 0.63 +1.4 614,358 + IAI47_02970 0.90 +0.4 614,358 + IAI47_02970 0.90 +0.2 614,419 + -0.3 614,419 + -0.3 614,419 + -0.7 614,419 + -1.0 614,419 + +0.9 614,419 + -0.4 614,420 - -1.3 614,420 - -0.0 614,420 - -2.4 614,420 - -0.6 614,432 - -0.7 614,649 + IAI47_02975 0.16 -0.6 614,650 - IAI47_02975 0.16 -0.6 614,650 - IAI47_02975 0.16 +0.5 614,683 + IAI47_02975 0.18 -0.0 614,684 - IAI47_02975 0.18 -0.6 614,684 - IAI47_02975 0.18 +0.4 614,734 + IAI47_02975 0.21 +0.6 614,734 + IAI47_02975 0.21 +0.0 614,734 + IAI47_02975 0.21 +1.7 614,895 + IAI47_02975 0.32 +0.8 614,895 + IAI47_02975 0.32 -1.1 614,896 - IAI47_02975 0.32 -0.5 614,896 - IAI47_02975 0.32 -1.2 614,919 + IAI47_02975 0.34 -1.8 614,919 + IAI47_02975 0.34 -0.1 614,919 + IAI47_02975 0.34 -0.4 614,919 + IAI47_02975 0.34 +0.3 614,920 - IAI47_02975 0.34 +0.1 614,920 - IAI47_02975 0.34 +0.6 614,920 - IAI47_02975 0.34 -0.6 614,920 - IAI47_02975 0.34 -0.2 615,168 + IAI47_02975 0.51 -0.6 615,169 - IAI47_02975 0.51 +1.6 615,169 - IAI47_02975 0.51 +0.2 615,394 - IAI47_02975 0.66 +0.2 615,394 - IAI47_02975 0.66 +0.2 615,394 - IAI47_02975 0.66 -1.5 615,394 - IAI47_02975 0.66 -0.0 615,421 + IAI47_02975 0.68 +0.1 615,422 - IAI47_02975 0.68 -1.4
Or see this region's nucleotide sequence