Strain Fitness in Sphingomonas koreensis DSMZ 15582 around Ga0059261_0623

Experiment: methylglyoxal 0.001 vol%

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGa0059261_0621 and Ga0059261_0622 overlap by 4 nucleotidesGa0059261_0622 and Ga0059261_0623 are separated by 50 nucleotidesGa0059261_0623 and Ga0059261_0624 overlap by 7 nucleotidesGa0059261_0624 and Ga0059261_0625 overlap by 1 nucleotides Ga0059261_0621: Ga0059261_0621 - cob(I)yrinic acid a,c-diamide adenosyltransferase (EC 2.5.1.17), at 661,879 to 662,487 _0621 Ga0059261_0622: Ga0059261_0622 - ABC-type Fe3+-hydroxamate transport system, periplasmic component, at 662,484 to 663,323 _0622 Ga0059261_0623: Ga0059261_0623 - ABC-type Fe3+-siderophore transport system, permease component, at 663,374 to 664,369 _0623 Ga0059261_0624: Ga0059261_0624 - ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components, at 664,363 to 665,151 _0624 Ga0059261_0625: Ga0059261_0625 - nicotinate-nucleotide-dimethylbenzimidazole phosphoribosyltransferase (EC 2.4.2.21), at 665,151 to 666,164 _0625 Position (kb) 663 664 665Strain fitness (log2 ratio) -2 -1 0 1at 662.533 kb on + strandat 662.533 kb on + strandat 662.533 kb on + strandat 662.533 kb on + strandat 662.534 kb on - strandat 662.585 kb on + strand, within Ga0059261_0622at 662.585 kb on + strand, within Ga0059261_0622at 662.679 kb on + strand, within Ga0059261_0622at 662.680 kb on - strand, within Ga0059261_0622at 662.809 kb on + strand, within Ga0059261_0622at 662.810 kb on - strand, within Ga0059261_0622at 662.810 kb on - strand, within Ga0059261_0622at 662.810 kb on - strand, within Ga0059261_0622at 662.812 kb on + strand, within Ga0059261_0622at 662.812 kb on + strand, within Ga0059261_0622at 662.812 kb on + strand, within Ga0059261_0622at 662.812 kb on + strand, within Ga0059261_0622at 662.812 kb on + strand, within Ga0059261_0622at 662.813 kb on - strand, within Ga0059261_0622at 662.947 kb on + strand, within Ga0059261_0622at 662.948 kb on - strand, within Ga0059261_0622at 662.948 kb on - strand, within Ga0059261_0622at 662.959 kb on + strand, within Ga0059261_0622at 662.960 kb on - strand, within Ga0059261_0622at 662.960 kb on - strand, within Ga0059261_0622at 663.239 kb on + strand, within Ga0059261_0622at 663.335 kb on + strandat 663.336 kb on - strandat 663.336 kb on - strandat 663.692 kb on + strand, within Ga0059261_0623at 663.692 kb on + strand, within Ga0059261_0623at 663.693 kb on - strand, within Ga0059261_0623at 663.970 kb on + strand, within Ga0059261_0623at 663.970 kb on + strand, within Ga0059261_0623at 663.971 kb on - strand, within Ga0059261_0623at 664.147 kb on + strand, within Ga0059261_0623at 664.148 kb on - strand, within Ga0059261_0623at 664.362 kb on + strandat 664.362 kb on + strandat 664.499 kb on + strandat 664.499 kb on + strand, within Ga0059261_0624at 664.499 kb on + strand, within Ga0059261_0624at 664.499 kb on + strand, within Ga0059261_0624at 664.499 kb on + strand, within Ga0059261_0624at 664.499 kb on + strand, within Ga0059261_0624at 664.500 kb on - strand, within Ga0059261_0624at 664.500 kb on - strand, within Ga0059261_0624at 664.500 kb on - strand, within Ga0059261_0624at 664.536 kb on + strand, within Ga0059261_0624at 664.536 kb on + strand, within Ga0059261_0624at 664.600 kb on + strand, within Ga0059261_0624at 664.600 kb on + strand, within Ga0059261_0624at 664.600 kb on + strand, within Ga0059261_0624at 664.601 kb on - strand, within Ga0059261_0624at 664.601 kb on - strand, within Ga0059261_0624at 664.601 kb on - strand, within Ga0059261_0624at 664.601 kb on - strand, within Ga0059261_0624at 664.601 kb on - strand, within Ga0059261_0624at 664.601 kb on - strand, within Ga0059261_0624at 664.972 kb on + strand, within Ga0059261_0624at 664.973 kb on - strand, within Ga0059261_0624at 665.065 kb on + strand, within Ga0059261_0624at 665.065 kb on + strand, within Ga0059261_0624at 665.066 kb on - strand, within Ga0059261_0624at 665.066 kb on - strand, within Ga0059261_0624at 665.066 kb on - strand, within Ga0059261_0624at 665.066 kb on - strand, within Ga0059261_0624at 665.145 kb on + strandat 665.146 kb on - strandat 665.146 kb on - strandat 665.146 kb on - strandat 665.146 kb on - strandat 665.146 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction methylglyoxal 0.001 vol%
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662,533 + -0.1
662,533 + -0.7
662,533 + +0.0
662,533 + -0.1
662,534 - +0.2
662,585 + Ga0059261_0622 0.12 +0.4
662,585 + Ga0059261_0622 0.12 -0.8
662,679 + Ga0059261_0622 0.23 +0.2
662,680 - Ga0059261_0622 0.23 +0.5
662,809 + Ga0059261_0622 0.39 -1.0
662,810 - Ga0059261_0622 0.39 -0.7
662,810 - Ga0059261_0622 0.39 -1.2
662,810 - Ga0059261_0622 0.39 -0.3
662,812 + Ga0059261_0622 0.39 -1.4
662,812 + Ga0059261_0622 0.39 -0.8
662,812 + Ga0059261_0622 0.39 -1.0
662,812 + Ga0059261_0622 0.39 +0.0
662,812 + Ga0059261_0622 0.39 -0.5
662,813 - Ga0059261_0622 0.39 -0.6
662,947 + Ga0059261_0622 0.55 -1.0
662,948 - Ga0059261_0622 0.55 -0.3
662,948 - Ga0059261_0622 0.55 +0.9
662,959 + Ga0059261_0622 0.57 -1.1
662,960 - Ga0059261_0622 0.57 -0.2
662,960 - Ga0059261_0622 0.57 -2.3
663,239 + Ga0059261_0622 0.90 -0.6
663,335 + +0.1
663,336 - -2.1
663,336 - -1.0
663,692 + Ga0059261_0623 0.32 -0.5
663,692 + Ga0059261_0623 0.32 -0.3
663,693 - Ga0059261_0623 0.32 -1.7
663,970 + Ga0059261_0623 0.60 -0.3
663,970 + Ga0059261_0623 0.60 -1.3
663,971 - Ga0059261_0623 0.60 -0.3
664,147 + Ga0059261_0623 0.78 -0.2
664,148 - Ga0059261_0623 0.78 -0.7
664,362 + -0.8
664,362 + -0.6
664,499 + -0.8
664,499 + Ga0059261_0624 0.17 -1.6
664,499 + Ga0059261_0624 0.17 -0.8
664,499 + Ga0059261_0624 0.17 -0.3
664,499 + Ga0059261_0624 0.17 -0.5
664,499 + Ga0059261_0624 0.17 -0.8
664,500 - Ga0059261_0624 0.17 +0.2
664,500 - Ga0059261_0624 0.17 -2.0
664,500 - Ga0059261_0624 0.17 -1.1
664,536 + Ga0059261_0624 0.22 -0.3
664,536 + Ga0059261_0624 0.22 +0.2
664,600 + Ga0059261_0624 0.30 -1.1
664,600 + Ga0059261_0624 0.30 -1.3
664,600 + Ga0059261_0624 0.30 +1.2
664,601 - Ga0059261_0624 0.30 -1.4
664,601 - Ga0059261_0624 0.30 -0.5
664,601 - Ga0059261_0624 0.30 -0.4
664,601 - Ga0059261_0624 0.30 -1.3
664,601 - Ga0059261_0624 0.30 -0.1
664,601 - Ga0059261_0624 0.30 -0.5
664,972 + Ga0059261_0624 0.77 -0.4
664,973 - Ga0059261_0624 0.77 -0.1
665,065 + Ga0059261_0624 0.89 +0.1
665,065 + Ga0059261_0624 0.89 +0.0
665,066 - Ga0059261_0624 0.89 -0.3
665,066 - Ga0059261_0624 0.89 +0.0
665,066 - Ga0059261_0624 0.89 +0.2
665,066 - Ga0059261_0624 0.89 -0.3
665,145 + -1.9
665,146 - -0.2
665,146 - -0.7
665,146 - +0.4
665,146 - +0.2
665,146 - +0.1

Or see this region's nucleotide sequence