Strain Fitness in Sphingomonas koreensis DSMZ 15582 around Ga0059261_0526

Experiment: methylglyoxal 0.001 vol%

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGa0059261_0525 and Ga0059261_0526 are separated by 157 nucleotidesGa0059261_0526 and Ga0059261_0527 overlap by 4 nucleotides Ga0059261_0525: Ga0059261_0525 - Transcriptional regulator, at 527,788 to 528,990 _0525 Ga0059261_0526: Ga0059261_0526 - 3-hydroxyisobutyrate dehydrogenase and related beta-hydroxyacid dehydrogenases, at 529,148 to 530,026 _0526 Ga0059261_0527: Ga0059261_0527 - Predicted metal-dependent hydrolase of the TIM-barrel fold, at 530,023 to 531,042 _0527 Position (kb) 529 530 531Strain fitness (log2 ratio) -2 -1 0 1at 528.197 kb on + strand, within Ga0059261_0525at 528.864 kb on - strand, within Ga0059261_0525at 529.036 kb on - strandat 529.169 kb on - strandat 529.271 kb on + strand, within Ga0059261_0526at 529.272 kb on - strand, within Ga0059261_0526at 529.272 kb on - strand, within Ga0059261_0526at 529.272 kb on - strand, within Ga0059261_0526at 529.272 kb on - strand, within Ga0059261_0526at 529.392 kb on + strand, within Ga0059261_0526at 529.488 kb on - strand, within Ga0059261_0526at 529.666 kb on - strand, within Ga0059261_0526at 529.796 kb on + strand, within Ga0059261_0526at 529.797 kb on - strand, within Ga0059261_0526at 529.797 kb on - strand, within Ga0059261_0526at 529.798 kb on + strand, within Ga0059261_0526at 529.798 kb on + strand, within Ga0059261_0526at 529.799 kb on - strand, within Ga0059261_0526at 529.799 kb on - strand, within Ga0059261_0526at 529.799 kb on - strand, within Ga0059261_0526at 530.028 kb on + strandat 530.047 kb on + strandat 530.047 kb on + strandat 530.047 kb on + strandat 530.047 kb on + strandat 530.047 kb on + strandat 530.047 kb on + strandat 530.047 kb on + strandat 530.047 kb on + strandat 530.048 kb on - strandat 530.048 kb on - strandat 530.048 kb on - strandat 530.049 kb on + strandat 530.049 kb on + strandat 530.049 kb on + strandat 530.049 kb on + strandat 530.049 kb on + strandat 530.050 kb on - strandat 530.050 kb on - strandat 530.050 kb on - strandat 530.050 kb on - strandat 530.050 kb on - strandat 530.050 kb on - strandat 530.050 kb on - strandat 530.050 kb on - strandat 530.469 kb on + strand, within Ga0059261_0527at 530.470 kb on - strand, within Ga0059261_0527at 530.470 kb on - strand, within Ga0059261_0527at 530.494 kb on + strand, within Ga0059261_0527at 530.495 kb on - strand, within Ga0059261_0527at 530.500 kb on + strand, within Ga0059261_0527at 530.500 kb on + strand, within Ga0059261_0527at 530.500 kb on + strandat 530.501 kb on - strand, within Ga0059261_0527at 530.509 kb on + strand, within Ga0059261_0527at 530.509 kb on + strand, within Ga0059261_0527at 530.509 kb on + strand, within Ga0059261_0527at 530.510 kb on - strand, within Ga0059261_0527at 530.593 kb on + strand, within Ga0059261_0527at 530.596 kb on + strand, within Ga0059261_0527at 530.596 kb on + strand, within Ga0059261_0527at 530.596 kb on + strand, within Ga0059261_0527at 530.596 kb on + strand, within Ga0059261_0527at 530.596 kb on + strand, within Ga0059261_0527at 530.596 kb on + strand, within Ga0059261_0527at 530.596 kb on + strand, within Ga0059261_0527at 530.596 kb on + strand, within Ga0059261_0527at 530.596 kb on + strand, within Ga0059261_0527at 530.596 kb on + strand, within Ga0059261_0527at 530.597 kb on - strand, within Ga0059261_0527at 530.597 kb on - strand, within Ga0059261_0527at 530.597 kb on - strand, within Ga0059261_0527at 530.597 kb on - strand, within Ga0059261_0527at 530.597 kb on - strand, within Ga0059261_0527at 530.597 kb on - strand, within Ga0059261_0527at 530.597 kb on - strand, within Ga0059261_0527at 530.800 kb on + strand, within Ga0059261_0527at 530.800 kb on + strand, within Ga0059261_0527at 530.800 kb on + strand, within Ga0059261_0527at 530.800 kb on + strand, within Ga0059261_0527at 530.801 kb on - strand, within Ga0059261_0527at 530.801 kb on - strand, within Ga0059261_0527at 530.911 kb on + strand, within Ga0059261_0527at 530.912 kb on - strand, within Ga0059261_0527at 530.912 kb on - strand, within Ga0059261_0527at 530.912 kb on - strand, within Ga0059261_0527at 530.932 kb on + strand, within Ga0059261_0527at 530.932 kb on + strand, within Ga0059261_0527at 530.932 kb on + strand, within Ga0059261_0527at 530.932 kb on + strand, within Ga0059261_0527at 530.933 kb on - strand, within Ga0059261_0527at 530.933 kb on - strand, within Ga0059261_0527at 530.933 kb on - strand, within Ga0059261_0527

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Per-strain Table

Position Strand Gene LocusTag Fraction methylglyoxal 0.001 vol%
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528,197 + Ga0059261_0525 0.34 -0.3
528,864 - Ga0059261_0525 0.89 -0.2
529,036 - +0.7
529,169 - -0.5
529,271 + Ga0059261_0526 0.14 -1.1
529,272 - Ga0059261_0526 0.14 -0.3
529,272 - Ga0059261_0526 0.14 -0.3
529,272 - Ga0059261_0526 0.14 -0.1
529,272 - Ga0059261_0526 0.14 -0.3
529,392 + Ga0059261_0526 0.28 -1.1
529,488 - Ga0059261_0526 0.39 -2.1
529,666 - Ga0059261_0526 0.59 -0.1
529,796 + Ga0059261_0526 0.74 -1.1
529,797 - Ga0059261_0526 0.74 -0.9
529,797 - Ga0059261_0526 0.74 -0.2
529,798 + Ga0059261_0526 0.74 -0.7
529,798 + Ga0059261_0526 0.74 +0.1
529,799 - Ga0059261_0526 0.74 -1.2
529,799 - Ga0059261_0526 0.74 +0.4
529,799 - Ga0059261_0526 0.74 -0.3
530,028 + -1.0
530,047 + +1.6
530,047 + +0.1
530,047 + -0.3
530,047 + +0.2
530,047 + +0.2
530,047 + -0.4
530,047 + -1.5
530,047 + +0.6
530,048 - +0.5
530,048 - +0.1
530,048 - -0.1
530,049 + +0.1
530,049 + -0.1
530,049 + +0.0
530,049 + +0.1
530,049 + +1.3
530,050 - +0.5
530,050 - -0.2
530,050 - +0.4
530,050 - -1.1
530,050 - +0.7
530,050 - -0.9
530,050 - -0.3
530,050 - +0.4
530,469 + Ga0059261_0527 0.44 +0.9
530,470 - Ga0059261_0527 0.44 -0.5
530,470 - Ga0059261_0527 0.44 -0.0
530,494 + Ga0059261_0527 0.46 -0.3
530,495 - Ga0059261_0527 0.46 +0.5
530,500 + Ga0059261_0527 0.47 +1.3
530,500 + Ga0059261_0527 0.47 +0.1
530,500 + -0.9
530,501 - Ga0059261_0527 0.47 -0.1
530,509 + Ga0059261_0527 0.48 -0.3
530,509 + Ga0059261_0527 0.48 -0.0
530,509 + Ga0059261_0527 0.48 -0.6
530,510 - Ga0059261_0527 0.48 +0.1
530,593 + Ga0059261_0527 0.56 +0.3
530,596 + Ga0059261_0527 0.56 -0.1
530,596 + Ga0059261_0527 0.56 +0.2
530,596 + Ga0059261_0527 0.56 +0.3
530,596 + Ga0059261_0527 0.56 -1.9
530,596 + Ga0059261_0527 0.56 +1.1
530,596 + Ga0059261_0527 0.56 -0.6
530,596 + Ga0059261_0527 0.56 -0.5
530,596 + Ga0059261_0527 0.56 +1.1
530,596 + Ga0059261_0527 0.56 +0.4
530,596 + Ga0059261_0527 0.56 -0.6
530,597 - Ga0059261_0527 0.56 +0.3
530,597 - Ga0059261_0527 0.56 +0.0
530,597 - Ga0059261_0527 0.56 +0.3
530,597 - Ga0059261_0527 0.56 +0.0
530,597 - Ga0059261_0527 0.56 +0.0
530,597 - Ga0059261_0527 0.56 +0.5
530,597 - Ga0059261_0527 0.56 +0.1
530,800 + Ga0059261_0527 0.76 +0.3
530,800 + Ga0059261_0527 0.76 +1.4
530,800 + Ga0059261_0527 0.76 +1.0
530,800 + Ga0059261_0527 0.76 +0.0
530,801 - Ga0059261_0527 0.76 -0.2
530,801 - Ga0059261_0527 0.76 -0.4
530,911 + Ga0059261_0527 0.87 -0.0
530,912 - Ga0059261_0527 0.87 -0.9
530,912 - Ga0059261_0527 0.87 -0.0
530,912 - Ga0059261_0527 0.87 -0.8
530,932 + Ga0059261_0527 0.89 -0.3
530,932 + Ga0059261_0527 0.89 +0.0
530,932 + Ga0059261_0527 0.89 -0.6
530,932 + Ga0059261_0527 0.89 +0.4
530,933 - Ga0059261_0527 0.89 -2.1
530,933 - Ga0059261_0527 0.89 +0.3
530,933 - Ga0059261_0527 0.89 -0.5

Or see this region's nucleotide sequence