Strain Fitness in Sphingomonas koreensis DSMZ 15582 around Ga0059261_0249

Experiment: methylglyoxal 0.001 vol%

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntGa0059261_0247 and Ga0059261_0248 are separated by 36 nucleotidesGa0059261_0248 and Ga0059261_0249 are separated by 41 nucleotidesGa0059261_0249 and Ga0059261_0250 are separated by 0 nucleotidesGa0059261_0250 and Ga0059261_0251 overlap by 4 nucleotides Ga0059261_0247: Ga0059261_0247 - Arabinose efflux permease, at 236,906 to 238,168 _0247 Ga0059261_0248: Ga0059261_0248 - hypothetical protein, at 238,205 to 238,498 _0248 Ga0059261_0249: Ga0059261_0249 - Superfamily I DNA and RNA helicases, at 238,540 to 240,876 _0249 Ga0059261_0250: Ga0059261_0250 - Protein of unknown function (DUF3037), at 240,877 to 241,728 _0250 Ga0059261_0251: Ga0059261_0251 - hypothetical protein, at 241,725 to 242,447 _0251 Position (kb) 238 239 240 241Strain fitness (log2 ratio) -3 -2 -1 0 1at 237.858 kb on + strand, within Ga0059261_0247at 237.858 kb on + strand, within Ga0059261_0247at 237.858 kb on + strand, within Ga0059261_0247at 237.858 kb on + strand, within Ga0059261_0247at 237.858 kb on + strand, within Ga0059261_0247at 237.858 kb on + strand, within Ga0059261_0247at 237.858 kb on + strand, within Ga0059261_0247at 237.859 kb on - strand, within Ga0059261_0247at 237.859 kb on - strand, within Ga0059261_0247at 237.948 kb on + strand, within Ga0059261_0247at 237.948 kb on + strand, within Ga0059261_0247at 238.008 kb on + strand, within Ga0059261_0247at 238.008 kb on + strand, within Ga0059261_0247at 238.009 kb on - strand, within Ga0059261_0247at 238.083 kb on + strandat 238.083 kb on + strandat 238.083 kb on + strandat 238.083 kb on + strandat 238.084 kb on - strandat 238.084 kb on - strandat 238.089 kb on + strandat 238.089 kb on + strandat 238.089 kb on + strandat 238.090 kb on - strandat 238.090 kb on - strandat 238.099 kb on - strandat 238.341 kb on + strandat 238.341 kb on + strand, within Ga0059261_0248at 238.341 kb on + strand, within Ga0059261_0248at 238.341 kb on + strand, within Ga0059261_0248at 238.341 kb on + strandat 238.342 kb on - strand, within Ga0059261_0248at 238.342 kb on - strand, within Ga0059261_0248at 238.342 kb on - strand, within Ga0059261_0248at 238.717 kb on + strandat 239.089 kb on + strand, within Ga0059261_0249at 239.098 kb on + strand, within Ga0059261_0249at 239.098 kb on + strand, within Ga0059261_0249at 239.198 kb on - strand, within Ga0059261_0249at 239.233 kb on + strand, within Ga0059261_0249at 239.234 kb on - strand, within Ga0059261_0249at 239.234 kb on - strand, within Ga0059261_0249at 239.257 kb on + strand, within Ga0059261_0249at 239.257 kb on + strand, within Ga0059261_0249at 239.257 kb on + strand, within Ga0059261_0249at 239.257 kb on + strand, within Ga0059261_0249at 239.257 kb on + strand, within Ga0059261_0249at 239.258 kb on - strand, within Ga0059261_0249at 239.258 kb on - strand, within Ga0059261_0249at 239.329 kb on + strand, within Ga0059261_0249at 239.330 kb on - strand, within Ga0059261_0249at 239.330 kb on - strand, within Ga0059261_0249at 239.359 kb on - strand, within Ga0059261_0249at 239.359 kb on - strand, within Ga0059261_0249at 239.359 kb on - strand, within Ga0059261_0249at 239.359 kb on - strand, within Ga0059261_0249at 239.417 kb on - strand, within Ga0059261_0249at 239.417 kb on - strand, within Ga0059261_0249at 239.719 kb on + strand, within Ga0059261_0249at 239.719 kb on + strand, within Ga0059261_0249at 239.719 kb on + strand, within Ga0059261_0249at 239.720 kb on - strand, within Ga0059261_0249at 239.752 kb on + strand, within Ga0059261_0249at 239.753 kb on - strand, within Ga0059261_0249at 239.986 kb on + strand, within Ga0059261_0249at 239.986 kb on + strand, within Ga0059261_0249at 239.986 kb on + strand, within Ga0059261_0249at 239.986 kb on + strand, within Ga0059261_0249at 239.986 kb on + strand, within Ga0059261_0249at 239.986 kb on + strandat 239.986 kb on + strand, within Ga0059261_0249at 239.987 kb on - strand, within Ga0059261_0249at 239.987 kb on - strand, within Ga0059261_0249at 239.987 kb on - strand, within Ga0059261_0249at 239.987 kb on - strand, within Ga0059261_0249at 240.057 kb on + strand, within Ga0059261_0249at 240.094 kb on + strand, within Ga0059261_0249at 240.094 kb on + strand, within Ga0059261_0249at 240.096 kb on + strand, within Ga0059261_0249at 240.182 kb on - strand, within Ga0059261_0249at 240.182 kb on - strand, within Ga0059261_0249at 240.401 kb on - strand, within Ga0059261_0249at 240.401 kb on - strand, within Ga0059261_0249at 240.401 kb on - strand, within Ga0059261_0249at 240.463 kb on + strand, within Ga0059261_0249at 240.463 kb on + strand, within Ga0059261_0249at 240.463 kb on + strandat 240.464 kb on - strand, within Ga0059261_0249at 240.464 kb on - strand, within Ga0059261_0249at 240.464 kb on - strand, within Ga0059261_0249at 240.855 kb on + strandat 240.879 kb on - strandat 240.911 kb on + strandat 240.912 kb on - strandat 240.912 kb on - strandat 241.833 kb on + strand, within Ga0059261_0251at 241.833 kb on + strand, within Ga0059261_0251

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction methylglyoxal 0.001 vol%
remove
237,858 + Ga0059261_0247 0.75 +0.1
237,858 + Ga0059261_0247 0.75 -0.6
237,858 + Ga0059261_0247 0.75 +0.9
237,858 + Ga0059261_0247 0.75 -0.5
237,858 + Ga0059261_0247 0.75 -0.7
237,858 + Ga0059261_0247 0.75 -0.9
237,858 + Ga0059261_0247 0.75 -0.7
237,859 - Ga0059261_0247 0.75 -0.2
237,859 - Ga0059261_0247 0.75 -0.5
237,948 + Ga0059261_0247 0.83 -0.6
237,948 + Ga0059261_0247 0.83 +0.3
238,008 + Ga0059261_0247 0.87 -0.1
238,008 + Ga0059261_0247 0.87 +0.3
238,009 - Ga0059261_0247 0.87 -1.1
238,083 + -1.3
238,083 + -0.5
238,083 + +0.1
238,083 + -0.4
238,084 - -1.0
238,084 - -0.2
238,089 + -0.6
238,089 + +0.4
238,089 + +0.2
238,090 - +0.1
238,090 - -0.4
238,099 - +0.0
238,341 + -0.9
238,341 + Ga0059261_0248 0.46 +0.0
238,341 + Ga0059261_0248 0.46 -0.6
238,341 + Ga0059261_0248 0.46 -0.3
238,341 + +0.1
238,342 - Ga0059261_0248 0.47 -0.6
238,342 - Ga0059261_0248 0.47 -1.3
238,342 - Ga0059261_0248 0.47 +0.5
238,717 + -2.9
239,089 + Ga0059261_0249 0.23 -0.9
239,098 + Ga0059261_0249 0.24 -0.1
239,098 + Ga0059261_0249 0.24 -1.1
239,198 - Ga0059261_0249 0.28 -0.7
239,233 + Ga0059261_0249 0.30 -1.2
239,234 - Ga0059261_0249 0.30 -2.1
239,234 - Ga0059261_0249 0.30 -0.9
239,257 + Ga0059261_0249 0.31 -1.5
239,257 + Ga0059261_0249 0.31 -2.1
239,257 + Ga0059261_0249 0.31 +0.0
239,257 + Ga0059261_0249 0.31 -1.6
239,257 + Ga0059261_0249 0.31 -0.9
239,258 - Ga0059261_0249 0.31 -1.9
239,258 - Ga0059261_0249 0.31 -1.7
239,329 + Ga0059261_0249 0.34 -2.0
239,330 - Ga0059261_0249 0.34 -2.0
239,330 - Ga0059261_0249 0.34 -1.9
239,359 - Ga0059261_0249 0.35 -1.7
239,359 - Ga0059261_0249 0.35 -2.3
239,359 - Ga0059261_0249 0.35 -1.9
239,359 - Ga0059261_0249 0.35 -1.3
239,417 - Ga0059261_0249 0.38 -0.4
239,417 - Ga0059261_0249 0.38 -2.3
239,719 + Ga0059261_0249 0.50 -0.9
239,719 + Ga0059261_0249 0.50 -1.3
239,719 + Ga0059261_0249 0.50 -2.9
239,720 - Ga0059261_0249 0.50 -0.8
239,752 + Ga0059261_0249 0.52 -2.4
239,753 - Ga0059261_0249 0.52 -2.1
239,986 + Ga0059261_0249 0.62 +0.5
239,986 + Ga0059261_0249 0.62 -2.7
239,986 + Ga0059261_0249 0.62 -2.2
239,986 + Ga0059261_0249 0.62 -1.9
239,986 + Ga0059261_0249 0.62 -0.9
239,986 + -1.6
239,986 + Ga0059261_0249 0.62 -1.2
239,987 - Ga0059261_0249 0.62 -1.9
239,987 - Ga0059261_0249 0.62 -1.0
239,987 - Ga0059261_0249 0.62 -2.7
239,987 - Ga0059261_0249 0.62 -1.2
240,057 + Ga0059261_0249 0.65 -1.3
240,094 + Ga0059261_0249 0.66 -1.9
240,094 + Ga0059261_0249 0.66 -1.5
240,096 + Ga0059261_0249 0.67 -1.8
240,182 - Ga0059261_0249 0.70 -1.3
240,182 - Ga0059261_0249 0.70 -0.3
240,401 - Ga0059261_0249 0.80 -0.0
240,401 - Ga0059261_0249 0.80 -0.4
240,401 - Ga0059261_0249 0.80 -2.6
240,463 + Ga0059261_0249 0.82 -2.0
240,463 + Ga0059261_0249 0.82 -0.6
240,463 + +1.7
240,464 - Ga0059261_0249 0.82 -2.9
240,464 - Ga0059261_0249 0.82 -2.3
240,464 - Ga0059261_0249 0.82 -1.1
240,855 + +0.3
240,879 - -0.7
240,911 + +0.1
240,912 - -1.3
240,912 - -0.8
241,833 + Ga0059261_0251 0.15 -0.6
241,833 + Ga0059261_0251 0.15 +0.0

Or see this region's nucleotide sequence